YRC Public Data Repository - Protein Structure Prediction

Protein:	GLMM_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLMM_SHEON.

Description	E-value	Query Range	Subject Range
GLMM1_SHEAM - Phosphoglucosamine mutase 1 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glmM1 PE=3 SV...	464.0	[0..1]	[445..1]
GLMM_PSEAB - Phosphoglucosamine mutase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=glmM PE=3 SV=1 GLMM_PSEAE - Phosphoglucosamine mutase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 1... GLMM_PSEAE - Phosphoglucosamine mutase OS=Pseudomonas aeruginosa GN=glmM PE=3 SV=1	463.0	[0..1]	[443..1]
GLMM_PSEPK - Phosphoglucosamine mutase OS=Pseudomonas putida (strain KT2440) GN=glmM PE=3 SV=1	458.0	[0..1]	[441..1]
GLMM_PSEP1 - Phosphoglucosamine mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=glmM PE=3 SV=1	458.0	[0..1]	[443..1]
GLMM_ACTSZ - Phosphoglucosamine mutase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=glmM PE=3 SV=...	457.0	[0..1]	[444..1]
gi\|238793018, gi... - gi\|77977584\|ref\|ZP_00833028.1\| COG1109: Phosphomannomutase [Yersinia intermedia ATCC 29909], gi\|2387...	454.0	[0..1]	[444..1]
gi\|238724377, gi... - gi\|77974015\|ref\|ZP_00829558.1\| COG1109: Phosphomannomutase [Yersinia frederiksenii ATCC 33641], gi\|2...	454.0	[0..1]	[444..1]
GLMM_PHOLL - Phosphoglucosamine mutase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 10556... GLMM_PHOLL - Phosphoglucosamine mutase OS=Photorhabdus luminescens subsp. laumondii GN=glmM PE=3 SV=1	454.0	[0..1]	[444..1]
GLMM_PSEE4 - Phosphoglucosamine mutase OS=Pseudomonas entomophila (strain L48) GN=glmM PE=3 SV=1 gi\|95109010 - gi\|95109010\|emb\|CAK13706.1\| phosphoglucosamine mutase [Pseudomonas entomophila L48]	453.0	[0..1]	[441..1]
gi\|238715574, gi... - gi\|77958787\|ref\|ZP_00822815.1\| COG1109: Phosphomannomutase [Yersinia bercovieri ATCC 43970], gi\|2387...	453.0	[0..1]	[444..1]

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Predicted Domain #1

Region A:
Residues: [1-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERKFFGTD GIRGKVGSGQ MTPELALKLG WAAGRVLSRS GTKKVIIGKD TRISGYMFES  60
   61 ALEAGLSAAG LNVMLMGPMP TPAVAYLTRT FRAEAGVVIS ASHNPYYDNG IKFFSTDGSK 120
  121 LDDNLELEIE AELEKPLVCV ESHLLGKVSR IEDARGRYIE YCKGNFPADQ TLTGLKIVVD 180
  181 CAHGATYHIA PAVFRELGAE VIAIGDKPNG VNINDKVGAT SMAKICETVL AETADLGIAL 240
  241 DGDGDRIMMV NSKGEVIDGD QILYILACDA KARGVLRGGV VGTLMSNLGL DLALQALDIP 300
  301 FARSKVGDRY VMELLKELDW RIGGENSGHI LNLDHGTTGD GIVAGILVLA AMRRQNATLE 360
  361 QLTAPMEMLP QVLVNVRFEG EHDPLSSDKV KAAQAQVESE LGVRGRVLLR KSGTEPLIRV 420
  421 MVEGDDHNTV LAHANLIADA VKSAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	114.0
Match:	1wqaA
Description:	Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits