YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372781, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	277 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372781, gi|....

Description	E-value	Query Range	Subject Range
gi\|78358981, gi\|... - gi\|78368983\|ref\|ZP_00839164.1\| Dihydropteroate synthase [Shewanella sp. PV-4], gi\|78358981\|gb\|EAP008...	342.0	[0..2]	[272..5]
gi\|170025950, gi... - gi\|170025950\|ref\|YP_001722455.1\| dihydropteroate synthase [Yersinia pseudotuberculosis YPIII], gi\|16... gi\|186893836, gi... - gi\|186893836\|ref\|YP_001870948.1\| dihydropteroate synthase [Yersinia pseudotuberculosis PB1/+], gi\|18... gi\|51588109, gi\|... - gi\|51594827\|ref\|YP_069018.1\| dihydropteroate synthase [Yersinia pseudotuberculosis IP 32953], gi\|515... Q66F65\|Q66F65_YERPS - Dihydropteroate synthase - Yersinia pseudotuberculosis gi\|117675036, gi... - gi\|77631472\|ref\|ZP_00794058.1\| COG0294: Dihydropteroate synthase and related enzymes [Yersinia pseud...	341.0	[0..2]	[275..1]
gi\|68548327, gi\|... - gi\|68548327\|ref\|ZP_00587836.1\| Dihydropteroate synthase [Shewanella amazonensis SB2B], gi\|68513962\|g...	341.0	[0..1]	[276..1]
gi\|77634743, gi\|... - gi\|77634743\|ref\|ZP_00796837.1\| COG0294: Dihydropteroate synthase and related enzymes [Yersinia pesti...	340.0	[0..2]	[275..1]
gi\|78691965, gi\|... - gi\|78691965\|ref\|ZP_00856548.1\| Dihydropteroate synthase [Shewanella sp. MR-7], gi\|78508642\|gb\|EAP220...	340.0	[0..1]	[276..1]
gi\|167423405, gi... - gi\|167423405\|ref\|ZP_02315158.1\| dihydropteroate synthase [Yersinia pestis biovar Mediaevalis str. K1... gi\|218930515, gi... - gi\|218930515\|ref\|YP_002348390.1\| dihydropteroate synthase [Yersinia pestis CO92], gi\|16123647\|ref\|NP... gi\|165919867, gi... - gi\|165928180\|ref\|ZP_02224012.1\| dihydropteroate synthase [Yersinia pestis biovar Orientalis str. F19... gi\|108777053, gi... - gi\|229903879\|ref\|ZP_04518992.1\| 7,8-dihydropteroate synthase [Yersinia pestis Nepal516], gi\|22967964... gi\|166011374, gi... - gi\|166011374\|ref\|ZP_02232272.1\| dihydropteroate synthase [Yersinia pestis biovar Antiqua str. E19790... gi\|108806049, gi... - gi\|108806049\|ref\|YP_649965.1\| dihydropteroate synthase [Yersinia pestis Antiqua], gi\|108777962\|gb\|AB... gi\|166214033, gi... - gi\|166214033\|ref\|ZP_02240068.1\| dihydropteroate synthase [Yersinia pestis biovar Antiqua str. B42003... gi\|89104071, gi\|... - gi\|89104071\|ref\|ZP_01176625.1\| COG0294: Dihydropteroate synthase and related enzymes [Yersinia pesti... gi\|167049307, gi... - gi\|167401282\|ref\|ZP_02306782.1\| dihydropteroate synthase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|166961397, gi... - gi\|167420591\|ref\|ZP_02312344.1\| dihydropteroate synthase [Yersinia pestis biovar Orientalis str. MG0... gi\|153997278, gi... - gi\|153997278\|ref\|ZP_02022378.1\| dihydropteroate synthase [Yersinia pestis CA88-4125], gi\|149288915\|g... gi\|229695519, gi... - gi\|229839153\|ref\|ZP_04459312.1\| 7,8-dihydropteroate synthase [Yersinia pestis biovar Orientalis str.... gi\|145212493, gi... - gi\|145600797\|ref\|YP_001164873.1\| dihydropteroate synthase [Yersinia pestis Pestoides F], gi\|14521249... gi\|229700420, gi... - gi\|229896642\|ref\|ZP_04511809.1\| 7,8-dihydropteroate synthase [Yersinia pestis Pestoides A], gi\|22970... gi\|25287095 - pir\|\|AF0425 dihydropteroate synthase (EC 2.5.1.15) [imported] - Yersinia pestis (strain CO92) gi\|229899717, gi... - gi\|229899717\|ref\|ZP_04514858.1\| 7,8-dihydropteroate synthase [Yersinia pestis biovar Orientalis str.... gi\|45435293, gi\|... - gi\|45440436\|ref\|NP_991975.1\| dihydropteroate synthase [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124597, gi\|... - gi\|22124597\|ref\|NP_668020.1\| dihydropteroate synthase [Yersinia pestis KIM], gi\|21957400\|gb\|AAM84271...	340.0	[0..2]	[275..1]
gi\|113969364, gi... - gi\|113969364\|ref\|YP_733157.1\| dihydropteroate synthase [Shewanella sp. MR-4], gi\|113884048\|gb\|ABI381...	340.0	[0..1]	[276..1]
gi\|26110188, gi\|... - gi\|26249760\|ref\|NP_755800.1\| Dihydropteroate synthase [Escherichia coli CFT073], gi\|26110188\|gb\|AAN8...	340.0	[0..2]	[275..23]
gi\|237706072, gi... - gi\|237706072\|ref\|ZP_04536553.1\| 7,8-dihydropteroate synthase [Escherichia sp. 3_2_53FAA], gi\|2268991... gi\|91074172, gi\|... - gi\|91212598\|ref\|YP_542584.1\| 7,8-dihydropteroate synthase [Escherichia coli UTI89], gi\|91074172\|gb\|A...	340.0	[0..1]	[275..22]
gi\|88860505, gi\|... - gi\|88860505\|ref\|ZP_01135143.1\| Dihydropteroate synthase (DHPS) (Dihydropteroate pyrophosphorylase) [...	339.0	[0..5]	[274..6]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFELISGTKR LSLASPVVMG ILNVTPDSFS DGGKFSSFEL ACQHADEMVA QGALIIDIGG  60
   61 ESTRPGAADV GVEDELARVI PLVEYVAKHH DVWISVDTSK PEVMRQAVNA GAHLINDVRA 120
  121 LLEPGALETA AQLNVPICLM HMQGAPRTMQ AAPEYHDLVA DVSEFLNERI QACLEAGIPR 180
  181 ERLLIDPGFG FGKTLAHNYE LLAKLETFTQ FELPILIGLS RKSMIGNLLA RPTSERLAGS 240
  241 LAGAMIAAQK GAHIIRVHDV PETVDMLKVL QATQAYY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.154902
Match:	1aj0A
Description:	CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF E. COLI DIHYDROPTEROATE SYNTHASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
dihydropteroate synthase activity	5.55484533231129	bayes_pls_golite062009
catalytic activity	1.94758748334979	bayes_pls_golite062009
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	1.59882258515727	bayes_pls_golite062009
transferase activity	1.09979615331123	bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups	1.09502814971491	bayes_pls_golite062009
binding	0.691846952184196	bayes_pls_golite062009
dihydroneopterin aldolase activity	0.570043482286316	bayes_pls_golite062009
diphosphotransferase activity	0.246882532482481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: