YRC Public Data Repository - Protein Structure Prediction

Protein:	PTH_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTH_SHEON.

Description	E-value	Query Range	Subject Range
PTH_PHOLL - Peptidyl-tRNA hydrolase OS=Photorhabdus luminescens subsp. laumondii GN=pth PE=3 SV=1 PTH_PHOLL - Peptidyl-tRNA hydrolase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	296.0	[0..1]	[194..1]
PTH_SHIBS - Peptidyl-tRNA hydrolase OS=Shigella boydii serotype 4 (strain Sb227) GN=pth PE=3 SV=1	293.0	[0..4]	[195..3]
gi\|89073086, gi\|... - gi\|89073086\|ref\|ZP_01159625.1\| peptidyl-tRNA hydrolase [Photobacterium sp. SKA34], gi\|89051039\|gb\|EA...	289.0	[0..2]	[195..3]
PTH_PSEA6 - Peptidyl-tRNA hydrolase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=pth PE=3 SV=1	283.0	[0..1]	[195..1]
gi\|225862104, gi... - gi\|225862104\|ref\|YP_002747482.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB102], gi\|225790416\|gb\|... gi\|227002837, gi... - gi\|227812725\|ref\|YP_002812734.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|228815815, gi... - gi\|228943858\|ref\|ZP_04106244.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar monterrey BG... gi\|228694146, gi... - gi\|229089183\|ref\|ZP_04220465.1\| Peptidyl-tRNA hydrolase [Bacillus cereus Rock3-42], gi\|228694146\|gb\|... gi\|229182446, gi... - gi\|229182446\|ref\|ZP_04309698.1\| Peptidyl-tRNA hydrolase [Bacillus cereus BGSC 6E1], gi\|228601026\|gb\|... gi\|229602955, gi... - gi\|229602955\|ref\|YP_002864703.1\| aminoacyl-tRNA hydrolase [Bacillus anthracis str. A0248], gi\|229267... gi\|254724192 - gi\|254724192\|ref\|ZP_05185977.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A1055] gi\|170127525, gi... - gi\|170707529\|ref\|ZP_02897982.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0389], gi\|17012752... gi\|170688886, gi... - gi\|170688886\|ref\|ZP_02880088.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0465], gi\|17066711... gi\|190559880, gi... - gi\|190568956\|ref\|ZP_03021857.1\| peptidyl-tRNA hydrolase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|177655322, gi... - gi\|177655322\|ref\|ZP_02936851.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0174], gi\|17208016... gi\|196027394, gi... - gi\|196041774\|ref\|ZP_03109064.1\| peptidyl-tRNA hydrolase [Bacillus cereus NVH0597-99], gi\|196027394\|g... gi\|196036361, gi... - gi\|196036361\|ref\|ZP_03103758.1\| peptidyl-tRNA hydrolase [Bacillus cereus W], gi\|195990991\|gb\|EDX5496... gi\|196021792, gi... - gi\|196047390\|ref\|ZP_03114603.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB108], gi\|196021792\|gb\|E... gi\|65317511, gi\|... - gi\|65317511\|ref\|ZP_00390470.1\| COG0193: Peptidyl-tRNA hydrolase [Bacillus anthracis str. A2012], ref... gi\|165872550, gi... - gi\|165872550\|ref\|ZP_02217182.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0488], gi\|16471167... gi\|167641506, gi... - gi\|167641506\|ref\|ZP_02399754.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0193], gi\|16751049... gi\|167529527, gi... - gi\|167635053\|ref\|ZP_02393370.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0442], gi\|16752952...	281.0	[0..2]	[191..20]
PTH_THICR - Peptidyl-tRNA hydrolase OS=Thiomicrospira crunogena (strain XCL-2) GN=pth PE=3 SV=1	280.0	[0..1]	[191..1]
gi\|27262436 - gi\|27262436\|gb\|AAN87499.1\| Peptidyl-tRNA hydrolase [Heliobacillus mobilis]	279.0	[0..4]	[191..1]
gi\|47500452, gi\|... - gi\|47525304\|ref\|YP_016653.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30260242, gi\|... - gi\|30260242\|ref\|NP_842619.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Ames], gi\|30253563\|gb\|... PTH_BACAN - Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1 PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pth PE=3 SV=1 gi\|49183085, gi\|... - gi\|49183085\|ref\|YP_026337.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Sterne], gi\|49177012\|g... PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian GN=pth PE=3 SV=1	279.0	[0..4]	[191..1]
gi\|75759613, gi\|... - gi\|75759613\|ref\|ZP_00739699.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar israelensis A... gi\|29893862, gi\|... - gi\|30018322\|ref\|NP_829953.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 14579], gi\|29893862\|gb\|AA...	278.0	[0..2]	[191..23]
gi\|42779130, gi\|... - gi\|42779130\|ref\|NP_976377.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 10987], gi\|42735045\|gb\|AA...	278.0	[0..2]	[191..23]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEIKLIVGL ANPGAEYVQT RHNAGAWYVE ELARICGVSL VADSKYFGLT ARAVLHGKDV  60
   61 RLLIPTTYMN LSGKAVGALA NFFRITPEEI LVAHDELDMP PGVAKFKLGG GHGGHNGLKD 120
  121 IIAKLANDKN FYRLRIGIGH PGDKNKVSGY VLGKAPAKEQ ELINAAVDEA VRSTEILFKE 180
  181 DMVKAMTRLH SFKAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.69897
Match:	2pthA
Description:	PEPTIDYL-TRNA HYDROLASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aminoacyl-tRNA hydrolase activity	2.52131013443946	bayes_pls_golite062009
catalytic activity	1.78077210975677	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.734671141446533	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: