YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372766, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	404 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372766, gi|....

Description	E-value	Query Range	Subject Range
gi\|45506407, gi\|... - gi\|75907449\|ref\|YP_321745.1\| 2-octaprenyl-6-methoxyphenyl hydroxylase [Anabaena variabilis ATCC 2941...	245.0	[0..2]	[403..9]
gi\|17133409, gi\|... - gi\|17231766\|ref\|NP_488314.1\| 2-octaprenyl-6-methoxyphenyl hydroxylase [Nostoc sp. PCC 7120], gi\|1713... gi\|25285745 - pir\|\|AC2340 hypothetical protein ubiH [imported] - Nostoc sp. (strain PCC 7120)	243.0	[0..1]	[403..6]
gi\|113888019, gi... - gi\|78691821\|ref\|ZP_00856414.1\| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 [Shewanella ...	242.0	[0..2]	[404..6]
gi\|113884034, gi... - gi\|82498448\|ref\|ZP_00883945.1\| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 [Shewanella ...	241.0	[0..2]	[404..6]
gi\|54310001, gi\|... - gi\|54310001\|ref\|YP_131021.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Photobacte...	237.0	[0..10]	[402..31]
gi\|160862065, gi... - gi\|160876543\|ref\|YP_001555859.1\| UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase [She...	236.0	[0..1]	[404..1]
gi\|90581599, gi\|... - gi\|90581599\|ref\|ZP_01237390.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Vibrio a...	235.0	[0..15]	[403..2]
gi\|117919459, gi... - gi\|78688121\|ref\|ZP_00852842.1\| Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 [Shewanella ...	235.0	[0..17]	[404..21]
gi\|114769835 - gi\|114769835\|ref\|ZP_01447445.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family prot... gi\|114769835, gi... - gi\|114769835\|ref\|ZP_01447445.1\| ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family prot...	234.0	[0..13]	[404..1]
gi\|89049197, gi\|... - gi\|89074958\|ref\|ZP_01161403.1\| 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [Photobac...	234.0	[0..15]	[403..2]

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Predicted Domain #1

Region A:
Residues: [1-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTQQSASI TSETQSFDVI LVGGGMVGAA TAIGLAQQGL HIAVIESFAP EAYSPEQALD  60
   61 VRVSAISVAS EHLLEQLGAL DSLLKMRNVP YLGLETWELD GCITQFHSSQ IGASHLGHIV 120
  121 ENRLVQLALW EQMQQWENIR LFCPERVAHF ARGVDTVSVH LQSGCLLEAK LLVGADGANS 180
  181 HVRQWAGIGI SGWDYAQSAM LINIQTTQGQ QDVTWQQFTP SGPRSLLPLP GNHASLVWYD 240
  241 DANRIKQLMQ LNNKQLAEQI RQHFPARLDS DFIVEAKGSF ALTRRHAQVY VKPNVVILGD 300
  301 AAHTINPLAG QGVNLGFKDV EALLSVIKAA LTEDKPWWST EVLGKYQAKR YLDNQLMMTT 360
  361 MDVFYAGFSN DILPLKLLRN GALKLANINS PLKQTVLKYA MGLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	2qa2A
Description:	No description for 2qa2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits