YRC Public Data Repository - Protein Structure Prediction

Protein:	SYL_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	859 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYL_SHEON.

Description	E-value	Query Range	Subject Range
SYL_SHESW - Leucine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=leuS PE=3 SV=1	787.0	[0..1]	[859..1]
SYL_SHEPC - Leucine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=leuS PE=3 SV=1	787.0	[0..1]	[859..1]
gi\|160876553, gi... - gi\|160876553\|ref\|YP_001555869.1\| leucyl-tRNA synthetase [Shewanella baltica OS195], gi\|160862075\|gb\|...	785.0	[0..1]	[859..16]
SYL_SHESA - Leucine--tRNA ligase OS=Shewanella sp. (strain ANA-3) GN=leuS PE=3 SV=1	785.0	[0..1]	[859..1]
gi\|68518117, gi\|... - gi\|68544174\|ref\|ZP_00583842.1\| Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia [Shewanella ...	785.0	[0..1]	[859..16]
SYL_SHESR - Leucine--tRNA ligase OS=Shewanella sp. (strain MR-7) GN=leuS PE=3 SV=1	785.0	[0..1]	[859..1]
SYL_SHESM - Leucine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=leuS PE=3 SV=1	784.0	[0..1]	[859..1]
gi\|82714711, gi\|... - gi\|82738215\|ref\|ZP_00901052.1\| Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia [Pseudomonas...	781.0	[0..1]	[859..39]
gi\|91792159, gi\|... - gi\|91792159\|ref\|YP_561810.1\| leucyl-tRNA synthetase [Shewanella denitrificans OS217], gi\|91714161\|gb...	777.0	[0..1]	[859..10]
gi\|68548415, gi\|... - gi\|68548415\|ref\|ZP_00587919.1\| Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia [Shewanella ...	776.0	[0..1]	[859..6]

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Predicted Domain #1

Region A:
Residues: [1-859]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEQYNPSEI EALVQKHWHD TKTFEVTEDQ NKEKFYCLSM FPYPSGRLHM GHVRNYTIGD  60
   61 VVARFQRLQG KNVLQPIGWD SFGLPAENAA INNKTAPAPW TYQNIEYMKN QLKLLGFGYD 120
  121 WSREIATCTP EYYRWEQWFF TKLYEKGLVY KKTASVNWCP NDETVLANEQ VQDGCCWRCD 180
  181 TPVEQKEIPQ WFIKITAYAE ELLNDIDTLD GWPEQVKTMQ RNWIGRSEGV EMTFGVAGSD 240
  241 KSFDIYTTRP DTLMGVTYVA IAAGHPLAEI AAQTNPELAA FIDECKNSTT SEAELATMEK 300
  301 RGVATGLYAI HPITGKQVPI WAANFVLMNY GTGAVMSVPG HDQRDYEFAK KYHLPIEAVI 360
  361 KPAEGDLDIS EAAYTEKGIL FNSGEFDGLD FDGAFNVIAN KLVAEGKGKR QVNYRLRDWG 420
  421 VSRQRYWGAP IPMVTLADGT VIPTPEDQLP VILPEDVVMD GIQSPIKADK EWAKTQVNGQ 480
  481 DALRETDTFD TFMESSWYYA RYCSPQAEQM LDPTKANYWL PVDQYIGGIE HACMHLLYFR 540
  541 FFHKLLRDAG LVNTNEPAKQ LLTQGMVLAD AFYYTNDKGA RVWVSPLDVA TTEKDDKGRI 600
  601 TKAIDKDGNE LVYTGMCKMS KSKNNGIDPQ VMVEKYGADT VRLFMMFASP PELTLEWQES 660
  661 GVEGAHRFIK RLWKLASEYV AQDNSEALDV SKLTSEQKAL RREVHKTIAK VTDDIGRRQM 720
  721 FNTAVAAVME LMNHLQKAPQ TTGQDRAIIG EALSAVVRLL YPIIPHVSFT LWNELGNTNS 780
  781 IEDSQWPVVD ESALVEDSKL IVVQVNGKVR AKITVAADAD QASVEALGMA DEQVIKYLDG 840
  841 VTVRKVIYVP GKLLSIVAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1h3nA
Description:	Leucyl-tRNA synthetase (LeuRS)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits