YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346816, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346816, gi|....

Description	E-value	Query Range	Subject Range
LIPB_SHEAM - Octanoyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=lipB PE=3 SV=1	259.0	[0..3]	[218..1]
LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus GN=lipB PE=3 SV=1 LIPB_VIBPA - Octanoyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=lipB PE=3 SV=...	259.0	[0..4]	[211..1]
LIPB_SHESA - Octanoyltransferase OS=Shewanella sp. (strain ANA-3) GN=lipB PE=3 SV=1	257.0	[0..3]	[219..1]
LIPB_SHESM - Octanoyltransferase OS=Shewanella sp. (strain MR-4) GN=lipB PE=3 SV=1 LIPB_SHESR - Octanoyltransferase OS=Shewanella sp. (strain MR-7) GN=lipB PE=3 SV=1	257.0	[0..3]	[219..1]
LIPB_VIBVY - Octanoyltransferase OS=Vibrio vulnificus (strain YJ016) GN=lipB PE=3 SV=1	257.0	[0..4]	[211..1]
LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus GN=lipB PE=3 SV=1 LIPB_VIBVU - Octanoyltransferase OS=Vibrio vulnificus (strain CMCP6) GN=lipB PE=3 SV=1	256.0	[0..4]	[211..1]
gi\|77813549, gi\|... - gi\|77813549\|ref\|ZP_00812823.1\| Lipoate-protein ligase B [Shewanella putrefaciens CN-32], gi\|77811328... LIPB_SHESW - Octanoyltransferase OS=Shewanella sp. (strain W3-18-1) GN=lipB PE=3 SV=1 gi\|124510185, gi... - gi\|124546233\|ref\|ZP_01705338.1\| lipoate-protein ligase B [Shewanella putrefaciens 200], gi\|124510185...	254.0	[0..3]	[219..1]
LIPB_SHEFN - Octanoyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=lipB PE=3 SV=1	253.0	[0..3]	[218..1]
LIPB_XANAC - Octanoyltransferase OS=Xanthomonas axonopodis pv. citri GN=lipB PE=3 SV=1 LIPB_XANAC - Octanoyltransferase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=lipB PE=3 SV=1	252.0	[0..3]	[211..13]
LIPB_XANCP - Octanoyltransferase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 5... LIPB_XANC8 - Octanoyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=lipB PE=3 SV=1 LIPB_XANCP - Octanoyltransferase OS=Xanthomonas campestris pv. campestris GN=lipB PE=3 SV=1	252.0	[0..2]	[211..12]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLQNTTLHI RHLGQQDYES VWHAMQHYTD TRNNDSPDEL WIVEHPPVFT QGQAGKSEHI  60
   61 LNPGDIPVIQ VDRGGQVTYH GPGQLVVYPL LDIKRSKIGV RQLVTYIEQS IIDMLAKYTI 120
  121 NAYAKADAPG VYVDERKVAS LGLRIRKGCS FHGLALNVDM DLAPFRRINP CGYAGLEMVQ 180
  181 CRELGGPQTV IEAGDQLIIT LSQLLGYQHL VHHQGLAAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.045757
Match:	1w66A
Description:	Title withheld
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	3.33073922220594	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	3.33073922220594	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	3.33034630936933	bayes_pls_golite062009
ligase activity	3.05852492533937	bayes_pls_golite062009
catalytic activity	2.36416267096403	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: