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View Structure Prediction Details

Protein: RLMI_SHEON
Organism: Shewanella oneidensis MR-1
Length: 396 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLMI_SHEON.

Description E-value Query
Range
Subject
Range
gi|46913808, gi|... - gi|54309372|ref|YP_130392.1| putative SAM-dependent methyltransferase [Photobacterium profundum SS9]...
304.0 [0..1] [395..22]
gi|90415052, gi|... - gi|90415052|ref|ZP_01223011.1| putative SAM-dependent methyltransferase [Photobacterium profundum 3T...
303.0 [0..1] [395..1]
gi|69160090, gi|... - gi|91794503|ref|YP_564154.1| SAM-dependent methyltransferase [Shewanella denitrificans OS217], gi|91...
302.0 [0..1] [396..15]
RLMI_SHESR - Ribosomal RNA large subunit methyltransferase I OS=Shewanella sp. (strain MR-7) GN=rlmI PE=3 SV=1
301.0 [0..1] [396..1]
RLMI_SHESM - Ribosomal RNA large subunit methyltransferase I OS=Shewanella sp. (strain MR-4) GN=rlmI PE=3 SV=1
300.0 [0..1] [396..1]
gi|90578896, gi|... - gi|90578896|ref|ZP_01234706.1| putative SAM-dependent methyltransferase [Vibrio angustum S14], gi|90...
299.0 [0..1] [395..1]
RLMI_SHESA - Ribosomal RNA large subunit methyltransferase I OS=Shewanella sp. (strain ANA-3) GN=rlmI PE=3 SV=1
299.0 [0..1] [396..1]
RLMI_SHEAM - Ribosomal RNA large subunit methyltransferase I OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB...
298.0 [0..1] [396..1]
RLMI_SHEFN - Ribosomal RNA large subunit methyltransferase I OS=Shewanella frigidimarina (strain NCIMB 400) GN=rl...
297.0 [0..1] [396..1]
gi|89051281, gi|... - gi|89073063|ref|ZP_01159610.1| putative SAM-dependent methyltransferase [Photobacterium sp. SKA34], ...
296.0 [0..1] [395..1]

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Predicted Domain #1
Region A:
Residues: [1-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIRIKLKPG REKSLERRHP WVFSNGIHNV KGKPEPGQTV DVVAHDGHWL GRGAWSGESQ  60
   61 IQVRVWTFDR EEEIDREFFK RRILRAQAGR DDLIREQGLT GYRLIAAESD GLPGITIDKY 120
  121 ANVLVCQLLS MGADVWRDTI VDVLAELYPD CAIYERSDVD SRKKEGLAST MGLLHGTLPE 180
  181 MPLIIEENGI KIAVDVTKGH KTGFYLDQRD NRAIAARFVK GKSVLNCFCY TGTFGLYAAK 240
  241 AGAASIENVD VSSLALDTAR LNMRVNGLSD DNVHYNEADV FKLLRQYRDE GKTFDVIVLD 300
  301 PPKFADNKSQ LNGACRGYKD INMIALQLLN PGGVLLTFSC SGLMPADLFQ KIVADAALDA 360
  361 KREIQFIERL SQASDHPIGS AFPEGFYLKG LVARVW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 2as0A
Description: Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methyltransferase activity 4.15445027778357 bayes_pls_golite062009
rRNA methyltransferase activity 4.09362182773099 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.07153733729662 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 3.39429041855776 bayes_pls_golite062009
RNA methyltransferase activity 3.07428840534971 bayes_pls_golite062009
N-methyltransferase activity 3.0539218951403 bayes_pls_golite062009
protein methyltransferase activity 3.01384869242051 bayes_pls_golite062009
transferase activity 2.22303238506686 bayes_pls_golite062009
histone methyltransferase activity 1.90505369820945 bayes_pls_golite062009
rRNA (adenine) methyltransferase activity 1.83964463328968 bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.75675289134467 bayes_pls_golite062009
DNA-methyltransferase activity 1.63765148226572 bayes_pls_golite062009
arginine N-methyltransferase activity 1.6030970825293 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 1.6030970825293 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
tRNA methyltransferase activity 1.12859857407629 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 1.10713374933008 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 1.05897361334523 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 0.703178429468566 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 0.639377525568296 bayes_pls_golite062009
O-methyltransferase activity 0.250946859465502 bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity 0.130104080746388 bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific) 0.130042730841119 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle