YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372707, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372707, gi|....

Description	E-value	Query Range	Subject Range
gi\|190150541, gi... - gi\|190150541\|ref\|YP_001969066.1\| hypothetical protein APP7_1272 [Actinobacillus pleuropneumoniae ser... gi\|32035604 - gi\|32035604\|ref\|ZP_00135525.1\| COG2606: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126208689, gi... - gi\|126208689\|ref\|YP_001053914.1\| hypothetical protein APL_1221 [Actinobacillus pleuropneumoniae L20]...	167.0	[0..1]	[157..1]
gi\|77811968, gi\|... - gi\|77813133\|ref\|ZP_00812414.1\| Conserved hypothetical protein 11 [Shewanella putrefaciens CN-32], gi... gi\|82741980, gi\|... - gi\|82741980\|ref\|ZP_00904687.1\| Conserved hypothetical protein 11 [Shewanella sp. W3-18-1], gi\|827206... gi\|124510239, gi... - gi\|124546287\|ref\|ZP_01705392.1\| ybaK/ebsC protein [Shewanella putrefaciens 200], gi\|124510239\|gb\|EAY...	165.0	[0..1]	[158..1]
gi\|113887941, gi... - gi\|78690106\|ref\|ZP_00854758.1\| Conserved hypothetical protein 11 [Shewanella sp. MR-7], gi\|78510513\|... gi\|82404629, gi\|... - gi\|82497364\|ref\|ZP_00882919.1\| Conserved hypothetical protein 11 [Shewanella sp. MR-4], gi\|82404629\|...	164.0	[0..1]	[158..1]
gi\|78687884, gi\|... - gi\|78687884\|ref\|ZP_00852618.1\| Conserved hypothetical protein 11 [Shewanella sp. ANA-3], gi\|78504395...	164.0	[0..1]	[158..1]
gi\|126175519, gi... - gi\|68540620\|ref\|ZP_00580371.1\| Conserved hypothetical protein 11 [Shewanella baltica OS155], gi\|6852...	162.0	[0..1]	[158..1]
gi\|145267857, gi... - gi\|145634991\|ref\|ZP_01790698.1\| tRNA pseudouridine synthase C [Haemophilus influenzae PittAA], gi\|14... Y1434_HAEIN, YBA... - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK OS=Haemophilus influenzae GN=ybaK PE=1 SV=2, Uncharacteri... gi\|144986455, gi... - gi\|145632799\|ref\|ZP_01788532.1\| tRNA pseudouridine synthase C [Haemophilus influenzae 3655], gi\|1449... gi\|229844091, gi... - gi\|229844091\|ref\|ZP_04464232.1\| hypothetical protein CGSHi6P18H1_06626 [Haemophilus influenzae 6P18H... gi\|229846711, gi... - gi\|229846711\|ref\|ZP_04466818.1\| hypothetical protein CGSHi7P49H1_01768 [Haemophilus influenzae 7P49H... gi\|145641591, gi... - gi\|145641591\|ref\|ZP_01797168.1\| hypothetical protein CGSHiR3021_01532 [Haemophilus influenzae R3021]... gi\|148718176, gi... - gi\|148826934\|ref\|YP_001291687.1\| hypothetical protein CGSHiGG_01040 [Haemophilus influenzae PittGG],... gi\|148716134, gi... - gi\|148825974\|ref\|YP_001290727.1\| hypothetical protein CGSHiEE_04755 [Haemophilus influenzae PittEE],... gi\|145641591 - gi\|145641591\|ref\|ZP_01797168.1\| hypothetical protein CGSHiR3021_01532 [Haemophilus influenzae R3021] gi\|145636143, gi... - gi\|145636143\|ref\|ZP_01791813.1\| hypothetical protein CGSHiHH_09350 [Haemophilus influenzae PittHH], ... YBAK_HAEIN - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 ... gi\|42629461 - gi\|42629461\|ref\|ZP_00155007.1\| COG2606: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|48866707, gi\|... - gi\|68250037\|ref\|YP_249149.1\| hypothetical protein NTHI1699 [Haemophilus influenzae 86-028NP], gi\|680...	161.0	[0..1]	[155..1]
gi\|145638952, gi... - gi\|145638952\|ref\|ZP_01794560.1\| tRNA pseudouridine synthase C [Haemophilus influenzae PittII], gi\|14... gi\|144978300, gi... - gi\|145629457\|ref\|ZP_01785255.1\| tRNA pseudouridine synthase C [Haemophilus influenzae 22.1-21], gi\|1... gi\|42631733 - gi\|42631733\|ref\|ZP_00157271.1\| COG2606: Uncharacterized conserved protein [Haemophilus influenzae R2...	161.0	[0..1]	[155..1]
gi\|160862167, gi... - gi\|160876645\|ref\|YP_001555961.1\| ybaK/ebsC protein [Shewanella baltica OS195], gi\|160862167\|gb\|ABX50...	160.0	[0..1]	[158..1]
gi\|117622740, gi... - gi\|117622740\|ref\|YP_851653.1\| hypothetical protein APECO1_1532 [Escherichia coli APEC O1], gi\|115511... gi\|227884506, gi... - gi\|227884506\|ref\|ZP_04002311.1\| transcriptional regulator [Escherichia coli 83972], gi\|227838592\|gb\|... gi\|237707519, gi... - gi\|237707519\|ref\|ZP_04538000.1\| ybaK [Escherichia sp. 3_2_53FAA], gi\|226898729\|gb\|EEH84988.1\| ybaK [... gi\|26106894, gi\|... - gi\|26246496\|ref\|NP_752535.1\| hypothetical protein c0601 [Escherichia coli CFT073], gi\|26106894\|gb\|AA... gi\|110342336, gi... - gi\|110640744\|ref\|YP_668472.1\| hypothetical protein ECP_0544 [Escherichia coli 536], gi\|110342336\|gb\|... gi\|190906048, gi... - gi\|75238235\|ref\|ZP_00722236.1\| COG2606: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|218425909, gi... - gi\|218688345\|ref\|YP_002396557.1\| hypothetical protein ECED1_0505 [Escherichia coli ED1a], gi\|2184259... gi\|218557393, gi... - gi\|218557393\|ref\|YP_002390306.1\| hypothetical protein ECS88_0480 [Escherichia coli S88], gi\|21836416... gi\|91209557, gi\|... - gi\|91209557\|ref\|YP_539543.1\| hypothetical protein UTI89_C0511 [Escherichia coli UTI89], gi\|91071131\|...	160.0	[0..1]	[156..1]
gi\|1074777 - pir\|\|H64171 hypothetical protein HI1434 - Haemophilus influenzae (strain Rd KW20) gi\|1574272, gi\|1... - gi\|16273339\|ref\|NP_439583.1\| hypothetical protein HI1434 [Haemophilus influenzae Rd KW20], gi\|157427...	160.0	[0..1]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAVQMAKK AKIPFEVLEY SHDPHCAAYG EEAANVLGLA PAQVFKTLLV ATDKAHAPLA  60
   61 VALVPVDHQL NLKAVAKCLG QKKLQMADAD LAQKSSGYLV GGISPLAQKK LLPTIIDESA 120
  121 KQFDKIYVSA GRRGLEICLT ANDLAKLCRG SFADIKTL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.69897
Match:	2dxaA
Description:	No description for 2dxaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits