YRC Public Data Repository - Protein Structure Prediction

Protein:	PROB_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROB_SHEON.

Description	E-value	Query Range	Subject Range
PROB_SYNE7 - Glutamate 5-kinase OS=Synechococcus elongatus (strain PCC 7942) GN=proB PE=3 SV=1	336.0	[0..10]	[371..4]
PROB_SYNP6 - Glutamate 5-kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=proB PE=3 SV...	336.0	[0..10]	[371..7]
PROB_THETN - Glutamate 5-kinase OS=Thermoanaerobacter tengcongensis GN=proB PE=3 SV=1 gi\|254479125, gi... - gi\|254479125\|ref\|ZP_05092476.1\| glutamate 5-kinase [Carboxydibrachium pacificum DSM 12653], gi\|22348... PROB_CALS4 - Glutamate 5-kinase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 110...	333.0	[0..10]	[372..2]
gi\|241902816, gi... - gi\|241902816\|ref\|ZP_04787547.1\| glutamate 5-kinase [Thermoanaerobacter brockii subsp. finnii Ako-1],... gi\|242257172, gi... - gi\|242257172\|ref\|ZP_04802045.1\| glutamate 5-kinase [Thermoanaerobacter sp. X513], gi\|242231277\|gb\|EE... PROB_THEPX - Glutamate 5-kinase OS=Thermoanaerobacter sp. (strain X514) GN=proB PE=3 SV=1 PROB_THEP3 - Glutamate 5-kinase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=proB PE=3 SV=...	330.0	[0..10]	[372..2]
PROB_NOSS1 - Glutamate 5-kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=proB PE=3 SV=2	330.0	[0..1]	[371..5]
PROB_GEOMG - Glutamate 5-kinase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=proB PE=3 ...	329.0	[0..1]	[372..1]
PROB_DECAR - Glutamate 5-kinase OS=Dechloromonas aromatica (strain RCB) GN=proB PE=3 SV=1	329.0	[0..1]	[371..1]
gi\|127513776, gi... - gi\|78367577\|ref\|ZP_00837843.1\| Glutamate 5-kinase, ProB-related [Shewanella sp. PV-4], gi\|78360322\|g...	327.0	[0..1]	[372..3]
PROB_ANAVT - Glutamate 5-kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=proB PE=3 SV=1	326.0	[0..9]	[371..3]
PROB_PSEA7 - Glutamate 5-kinase OS=Pseudomonas aeruginosa (strain PA7) GN=proB PE=3 SV=1	324.0	[0..1]	[372..1]

Back

Predicted Domain #1

Region A:
Residues: [1-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSEIAYRR VVVKLGTSVL TSGSKQLDKA HMVELARQMA ALMRSGVEVV LCTSGAIAAG  60
   61 REHLQYPALP DTMANKQLLA AVGQSQLILA WAQLFSIYGL HVGQLLLTRA DLHDRERYLN 120
  121 ARDTLNALLA NNIIPIINEN DAVATNEIKV GDNDNLSARA ALLCDADLLI LLTDQKGLFD 180
  181 ADPRTNPNAK LISQVEKIDD SLRLLAGGSV SGLGTGGMST KLEAADIARR AGIEVVIASG 240
  241 HHPDVIKKVV AKESIGTHFS AIENPLESRK QWILAGPAAQ GSLVLDAGAV KAVTEKGRSL 300
  301 LSKGIIGVKG EFERGATLQL VDQNGKIIAR GITRYCGEAL GLIAGKHSDE IESVLGYDYG 360
  361 DAIVHRNDMV VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	86.69897
Match:	2j5tA
Description:	No description for 2j5tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits