YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372703, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	429 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372703, gi|....

Description	E-value	Query Range	Subject Range
gi\|67535384, gi\|... - gi\|67543205\|ref\|ZP_00421138.1\| Xanthine/uracil/vitamin C permease [Burkholderia vietnamiensis G4], g...	254.0	[0..2]	[428..139]
gi\|94314734, gi\|... - gi\|94314734\|ref\|YP_587943.1\| xanthine/uracil/vitamin C permease [Ralstonia metallidurans CH34], gi\|9...	236.0	[0..1]	[428..23]
gi\|113531013, gi... - gi\|116696514\|ref\|YP_842090.1\| major facilitator superfamily transporter AzgA family protein [Ralston...	234.0	[0..1]	[428..28]
gi\|90413686, gi\|... - gi\|90413686\|ref\|ZP_01221675.1\| putative transporter [Photobacterium profundum 3TCK], gi\|90325307\|gb\|...	233.0	[0..2]	[428..20]
gi\|62129968, gi\|... - gi\|62182335\|ref\|YP_218752.1\| xanthine/uracil permease family protein [Salmonella enterica subsp. ent...	233.0	[0..1]	[428..56]
gi\|54309433, gi\|... - gi\|54309433\|ref\|YP_130453.1\| putative transporter [Photobacterium profundum SS9], gi\|46913869\|emb\|CA...	233.0	[0..2]	[428..20]
gi\|16422424 - gi\|16422424\|gb\|AAL22709.1\| putative xanthine/uracil permeases family [Salmonella enterica subsp. ent... gi\|56415721, gi\|... - gi\|56415721\|ref\|YP_152796.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|197364649, gi... - gi\|197364649\|ref\|YP_002144286.1\| putative membrane transport protein [Salmonella enterica subsp. ent...	232.0	[0..1]	[428..56]
gi\|16504783, gi\|... - gi\|25309459\|pir\|\|AH0956 probable membrane transport protein STY3932 [imported] - Salmonella enterica... gi\|29143966, gi\|... - gi\|29143966\|ref\|NP_807308.1\| putative membrane transport protein [Salmonella enterica subsp. enteric... gi\|16762478 - gi\|16762478\|ref\|NP_458095.1\| putative membrane transport protein [Salmonella enterica subsp. enteric...	232.0	[0..1]	[428..56]
gi\|72122498, gi\|... - gi\|73539161\|ref\|YP_299528.1\| xanthine/uracil/vitamin C permease:sulphate transporter [Ralstonia eutr...	230.0	[0..1]	[428..23]
gi\|26990975, gi\|... - gi\|26990975\|ref\|NP_746400.1\| xanthine/uracil/vitamin C permease [Pseudomonas putida KT2440], gi\|2498...	230.0	[0..2]	[428..22]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKLFKLKQ NQTSLKQEAM AGLTTFMTMA YIIFVNPMML ADAGMDHGAV FVATCLATAV  60
   61 GCIVMGLMAN YPIALAPGMG LNAFFTYTVV GEMGYSWETA LGAVFLSGIC FLILSLVRIR 120
  121 EWIVNSIPMS LRIGIAAGIG LFLALIGLKS AGIVVASPAT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [161-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVTMGDITAF PAVMAVLGFF LIIAMVQRGM KSAVILSILI ITGLGLLFGD VHYNGIVSMP  60
   61 PSIAPTFMQM DLSQVFEVTM LSVVFAFLFV DLFDTSGTLV AVAQRGGF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [269-429]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDENNRLPRL NRALTADSLA TIAGAALGTS TTTSYIESTA GVSAGGRTGL TAVVVGLLFI  60
   61 LALFVSPLAG MIPAYATAGT LFYVAILMMS GLVHVEWEDL TEAAPVVIVC ILMPLTFSIA 120
  121 TGIALGIISY AAIKLLTGRF SDLNIGVLVL AAMFVAKFIY A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits