YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372693, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372693, gi|....

Description	E-value	Query Range	Subject Range
gi\|82404642, gi\|... - gi\|82497377\|ref\|ZP_00882932.1\| thiamin biosynthesis lipoprotein ApbE [Shewanella sp. MR-4], gi\|82404...	448.0	[0..1]	[347..23]
gi\|78687871, gi\|... - gi\|78687871\|ref\|ZP_00852605.1\| thiamin biosynthesis lipoprotein ApbE [Shewanella sp. ANA-3], gi\|7850...	446.0	[0..1]	[347..23]
gi\|78508664, gi\|... - gi\|78691935\|ref\|ZP_00856520.1\| thiamin biosynthesis lipoprotein ApbE [Shewanella sp. MR-7], gi\|78508...	446.0	[0..1]	[347..23]
gi\|120560118, gi... - gi\|82743271\|ref\|ZP_00905927.1\| thiamin biosynthesis lipoprotein ApbE [Shewanella sp. W3-18-1], gi\|82...	443.0	[0..1]	[347..1]
gi\|124510747, gi... - gi\|124545771\|ref\|ZP_01704946.1\| ApbE-like lipoprotein [Shewanella putrefaciens 200], gi\|124510747\|gb... gi\|146292050, gi... - gi\|77813644\|ref\|ZP_00812918.1\| ApbE-like lipoprotein [Shewanella putrefaciens CN-32], gi\|77811423\|gb...	441.0	[0..1]	[347..1]
gi\|151366559, gi... - gi\|153001941\|ref\|YP_001367622.1\| ApbE family lipoprotein [Shewanella baltica OS185], gi\|151366559\|gb... gi\|146865563, gi... - gi\|217974516\|ref\|YP_002359267.1\| ApbE family lipoprotein [Shewanella baltica OS223], gi\|217499651\|gb... gi\|68541793, gi\|... - gi\|68541793\|ref\|ZP_00581533.1\| ApbE-like lipoprotein [Shewanella baltica OS155], gi\|68520511\|gb\|EAN4... gi\|160876663, gi... - gi\|160876663\|ref\|YP_001555979.1\| ApbE family lipoprotein [Shewanella baltica OS195], gi\|160862185\|gb...	437.0	[0..1]	[346..1]
gi\|68516433, gi\|... - gi\|68546073\|ref\|ZP_00585622.1\| ApbE-like lipoprotein [Shewanella amazonensis SB2B], gi\|68516433\|gb\|E...	436.0	[0..11]	[347..1]
Q66E00\|Q66E00_YERPS - Thiamine biosynthesis lipoprotein precursor - Yersinia pseudotuberculosis gi\|229899409, gi... - gi\|229899409\|ref\|ZP_04514552.1\| predicted thiamine biosynthesis lipoprotein [Yersinia pestis biovar ... gi\|229681177, gi... - gi\|229901248\|ref\|ZP_04516370.1\| predicted thiamine biosynthesis lipoprotein [Yersinia pestis Nepal51... gi\|229695206, gi... - gi\|229838840\|ref\|ZP_04458999.1\| predicted thiamine biosynthesis lipoprotein [Yersinia pestis biovar ... gi\|229896008, gi... - gi\|229896008\|ref\|ZP_04511178.1\| predicted thiamine biosynthesis lipoprotein [Yersinia pestis Pestoid... gi\|51588525, gi\|... - gi\|51595243\|ref\|YP_069434.1\| thiamine biosynthesis lipoprotein [Yersinia pseudotuberculosis IP 32953... gi\|149291336, gi... - gi\|149364923\|ref\|ZP_01886958.1\| thiamine biosynthesis lipoprotein [Yersinia pestis CA88-4125], gi\|14... gi\|25324905 - pir\|\|AI0392 thiamin biosynthesis lipoprotein [imported] - Yersinia pestis (strain CO92) gi\|218930261, gi... - gi\|218930261\|ref\|YP_002348136.1\| thiamine biosynthesis lipoprotein [Yersinia pestis CO92], gi\|161233...	430.0	[0..11]	[347..1]
gi\|91191523, gi\|... - gi\|91223437\|ref\|ZP_01258702.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio alginolyticus 12G01], g...	429.0	[0..11]	[347..1]
gi\|254845122, gi... - gi\|254849417\|ref\|ZP_05238767.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae MO10], gi\|254... gi\|124119727, gi... - gi\|153221380\|ref\|ZP_01952358.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae MAK 757], gi\|... gi\|153821510, gi... - gi\|153821510\|ref\|ZP_01974177.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae B33], gi\|1265... gi\|9656853, gi\|1... - gi\|9656853\|gb\|AAF95433.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae O1 biovar El Tor st... gi\|153820241, gi... - gi\|153820241\|ref\|ZP_01972908.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae NCTC 8457], g... gi\|227082413, gi... - gi\|227082413\|ref\|YP_002810964.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae M66-2], gi\|2... gi\|146315593, gi... - gi\|227118735\|ref\|YP_002820631.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae O395], gi\|22... gi\|11280039 - pir\|\|A82094 thiamin biosynthesis lipoprotein ApbE VC2289 [imported] - Vibrio cholerae (strain N16961... gi\|121726751, gi... - gi\|121726751\|ref\|ZP_01679969.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae V52], gi\|1216... gi\|121586208, gi... - gi\|121586208\|ref\|ZP_01675999.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae 2740-80], gi\|...	427.0	[0..2]	[346..16]

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Predicted Domain #1

Region A:
Residues: [1-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKTLALKTS MFKHSVSWLV LVGLAFFISA CSKQDEVISL AGSTMGTTYH IKVVPNEHMP  60
   61 TAQLLQAEID LALEQVNNQM STYRPNSELS RFNQLPLEQS VEVSPDTIKV VREGMRLYDV 120
  121 TDKALDITLG PLVNLWGFGP DKRPTKVPSQ AEIDAAKAKT GIRELSIEGN LLRKHNAHLY 180
  181 VDLSSIAKGF GVDKVASILD KYQATGYLVE IGGELSIKGT KGDASSWRVA IEKPTDEGIA 240
  241 VQQVIEPGTM SMATSGDYRN YYEEAGQRFT HIIDPRTGLP INHKLASVTV LHNECMTADG 300
  301 FATAMMVLGT EASLELAKKE HLAIMLIEKQ GEGFKVYYSD AFKPFLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	106.0
Match:	2o18A
Description:	No description for 2o18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits