YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346723, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346723, gi|....

Description	E-value	Query Range	Subject Range
gi\|254845122, gi... - gi\|254849417\|ref\|ZP_05238767.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae MO10], gi\|254... gi\|124119727, gi... - gi\|153221380\|ref\|ZP_01952358.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae MAK 757], gi\|... gi\|153821510, gi... - gi\|153821510\|ref\|ZP_01974177.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae B33], gi\|1265... gi\|9656853, gi\|1... - gi\|9656853\|gb\|AAF95433.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae O1 biovar El Tor st... gi\|153820241, gi... - gi\|153820241\|ref\|ZP_01972908.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae NCTC 8457], g... gi\|227082413, gi... - gi\|227082413\|ref\|YP_002810964.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae M66-2], gi\|2... gi\|146315593, gi... - gi\|227118735\|ref\|YP_002820631.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae O395], gi\|22... gi\|11280039 - pir\|\|A82094 thiamin biosynthesis lipoprotein ApbE VC2289 [imported] - Vibrio cholerae (strain N16961... gi\|121726751, gi... - gi\|121726751\|ref\|ZP_01679969.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae V52], gi\|1216... gi\|121586208, gi... - gi\|121586208\|ref\|ZP_01675999.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio cholerae 2740-80], gi\|...	296.0	[0..5]	[271..60]
gi\|254478142, gi... - gi\|254478142\|ref\|ZP_05091524.1\| ApbE family protein [Carboxydibrachium pacificum DSM 12653], gi\|2234... gi\|20808837, gi\|... - gi\|20808837\|ref\|NP_624008.1\| thiamine biosynthesis lipoprotein [Thermoanaerobacter tengcongensis MB4... gi\|20808837 - gi\|20808837\|ref\|NP_624008.1\| Membrane-associated lipoprotein involved in thiamine biosynthesis [Ther...	295.0	[0..2]	[277..28]
gi\|75830038, gi\|... - gi\|75830038\|ref\|ZP_00759324.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt... gi\|75815776 - gi\|75815776\|ref\|ZP_00746269.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt... gi\|75827576 - gi\|75827576\|ref\|ZP_00757011.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	292.0	[0..5]	[271..15]
gi\|116216224, gi... - gi\|75823023\|ref\|ZP_00752561.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	291.0	[0..5]	[271..15]
gi\|75818899, gi\|... - gi\|75818899\|ref\|ZP_00749012.1\| COG1477: Membrane-associated lipoprotein involved in thiamine biosynt...	290.0	[0..5]	[271..15]
gi\|242232365, gi... - gi\|242256167\|ref\|ZP_04801063.1\| ApbE family lipoprotein [Thermoanaerobacter sp. X513], gi\|242232365\|... gi\|114804509, gi... - gi\|167039331\|ref\|YP_001662316.1\| ApbE family lipoprotein [Thermoanaerobacter sp. X514], gi\|166853571...	290.0	[0..2]	[276..32]
gi\|219993630, gi... - gi\|89210976\|ref\|ZP_01189357.1\| ApbE-like lipoprotein [Halothermothrix orenii H 168], gi\|89159434\|gb\|...	290.0	[0..3]	[278..42]
gi\|241903667, gi... - gi\|241903667\|ref\|ZP_04788387.1\| ApbE family lipoprotein [Thermoanaerobacter brockii subsp. finnii Ak... gi\|166855501, gi... - gi\|76797565\|ref\|ZP_00779863.1\| ApbE-like lipoprotein [Thermoanaerobacter ethanolicus ATCC 33223], gi...	289.0	[0..2]	[276..32]
gi\|153836754, gi... - gi\|153836754\|ref\|ZP_01989421.1\| thiamine biosynthesis lipoprotein ApbE [Vibrio parahaemolyticus AQ38... gi\|28807343, gi\|... - gi\|28899119\|ref\|NP_798724.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio parahaemolyticus RIMD 221... gi\|28807343 - gi\|28807343\|dbj\|BAC60608.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio parahaemolyticus RIMD 2210...	288.0	[0..2]	[272..24]
gi\|91191523, gi\|... - gi\|91223437\|ref\|ZP_01258702.1\| thiamin biosynthesis lipoprotein ApbE [Vibrio alginolyticus 12G01], g...	288.0	[0..2]	[272..24]

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Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRRAKPLLG TLIEIAVESV VEASSQSALD EPAIQAAITA AFSRITQIGR LLSFHQQDSE  60
   61 LNLLNRQPGQ WITLSQDSLR VFKLAKWFGK ASDNLFNCTI GGEMMSRGAL PCYLGMPLLL 120
  121 QGDWQDIEIR GNQARLARPL IVTFDGIAKG YAVDMAVREL RRAGVSGGWV NAGGDLKVFG 180
  181 SASLDVLCRG SNGLSQKVTV RNMALASSRV SLQLSLGCPA LLLPTGNVDM MSFDASNERV 240
  241 VSVQAPFAWR ADALTKVAGY LSAEAAKDKI QQLGGQLVC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.154902
Match:	2o18A
Description:	No description for 2o18A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits