YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372659, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372659, gi|....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	248.0	[0..3]	[366..977]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	235.0	[0..3]	[359..2481]
gi\|47221082 - gi\|47221082\|emb\|CAG12776.1\| unnamed protein product [Tetraodon nigroviridis]	209.0	[0..3]	[358..25]
gi\|46116238, gi\|... - gi\|46116238\|ref\|XP_384137.1\| hypothetical protein FG03961.1 [Gibberella zeae PH-1], gi\|42550586\|gb\|E...	206.0	[0..1]	[394..79]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	201.0	[0..1]	[395..149]
gi\|50753798 - gi\|50753798\|ref\|XP_414136.1\| PREDICTED: similar to system asc amino acid transporter Asc-1 [Gallus g...	199.0	[0..14]	[393..389]
gi\|116181860, gi... - gi\|88185855\|gb\|EAQ93323.1\| hypothetical protein CHGG_01558 [Chaetomium globosum CBS 148.51], gi\|1161...	199.0	[0..1]	[394..113]

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Predicted Domain #1

Region A:
Residues: [1-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKMLGSIA IVAGTAIGAG MLALPLATAA LGMVPAILLM VVIWGLSAYT SLLMLEINLR  60
   61 SGVGDNVHAI TGKLLGKKGQ IVQGASFLSL LVALTAAYLT GGSSLLVLKA QNMFDIVLDN 120
  121 QLAVVLFTIV LGGFAALGVA WVDKVSRFLF SLMILLLIVV VLFLLPEVSI STIATSAVAQ 180
  181 SLTSSWMAAI PVVFTSFGFH VCIATLVRYL DGDTVSLRKV LLIGSTIPLA CYIFWLLVTL 240
  241 GTVGGNEING FNGSLPALIS ALQEIAHTPL ISKCISLFAD LALITSFLGV TLSLYDFVAE 300
  301 LTRAKKTFVG RAQTWLLTFV PPLLCALYVP EGFVAVLGFA AVPLVVMIIF LPIAMALRQR 360
  361 QIQPQGYQVV GGTFALGLAG ILGAIIIGAQ LFVAL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.34
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits