YRC Public Data Repository - Protein Structure Prediction

Protein:	COBQ_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COBQ_SHEON.

Description	E-value	Query Range	Subject Range
gi\|82406891, gi\|... - gi\|82495055\|ref\|ZP_00880633.1\| Cobyric acid synthase CobQ [Shewanella sp. MR-4], gi\|82406891\|gb\|EAP4...	386.0	[0..1]	[504..36]
gi\|78688766, gi\|... - gi\|78688766\|ref\|ZP_00853433.1\| Cobyric acid synthase CobQ [Shewanella sp. MR-7], gi\|78511766\|gb\|EAP2...	384.0	[0..1]	[504..36]
gi\|117921713, gi... - gi\|78684701\|ref\|ZP_00849484.1\| Cobyric acid synthase CobQ [Shewanella sp. ANA-3], gi\|78507638\|gb\|EAP...	381.0	[0..1]	[504..36]
gi\|68520622, gi\|... - gi\|68541740\|ref\|ZP_00581481.1\| Cobyric acid synthase CobQ [Shewanella baltica OS155], gi\|68520622\|gb...	377.0	[0..1]	[504..55]
gi\|77811955, gi\|... - gi\|77813120\|ref\|ZP_00812401.1\| Cobyric acid synthase CobQ [Shewanella putrefaciens CN-32], gi\|778119...	376.0	[0..1]	[504..28]
gi\|84328213, gi\|... - gi\|84328213\|ref\|ZP_00976220.1\| COG1492: Cobyric acid synthase [Pseudomonas aeruginosa 2192], gi\|2542...	373.0	[0..1]	[505..9]
gi\|23106090, gi\|... - gi\|67153896\|ref\|ZP_00415641.1\| Cobyric acid synthase CobQ [Azotobacter vinelandii AvOP], ref\|ZP_0009... COBQ_AZOVD - Cobyric acid synthase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=cobQ PE=3 SV=1	372.0	[0..1]	[508..5]
COBQ_PSEAE - Cobyric acid synthase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228... COBQ_PSEAE - Cobyric acid synthase OS=Pseudomonas aeruginosa GN=cobQ PE=3 SV=1	372.0	[0..1]	[505..9]
gi\|160874134, gi... - gi\|160874134\|ref\|YP_001553450.1\| cobyric acid synthase [Shewanella baltica OS195], gi\|160859656\|gb\|A...	372.0	[0..1]	[503..55]
COBQ_PSEAB - Cobyric acid synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cobQ PE=3 SV=1	371.0	[0..1]	[505..9]

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Predicted Domain #1

Region A:
Residues: [1-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQGTTSDAG KSTLVAGICR LLARQGVNVA PFKPQNMALN SAVTVDGGEI GRAQALQAAA  60
   61 CYLVPHTDFN PILLKPSSDT GAQIIVQGKA LTTLEASAFF GEKSKDYKAM ALNAVLDSFE 120
  121 RLGQQYHTIV VEGAGSPAEI NLRAGDIANM GFAEAVDCPV IIIADIDKGG VFAHLVGTLA 180
  181 LLSESEQARV KGFVINRFRG DISLLQSGID WLEAYTQKPV LGVLPYLHDL HLDAEDALTD 240
  241 SPTKQAKSCF KVRVLVYPRT SNHTDVDPLR LHPDIDFDYV SLQTQALAQT PEIAADLLIL 300
  301 PGSKNVRADL AFLREQGWDK QIAKHLRYGG KVLGICGGYQ MLGERIADPL AIEDVFGTSQ 360
  361 GLGYLPISTE FKAEKQLRCV AGELTLIGQT VAVKGYEIHC GESQYLTSSD AAKGAPLRLI 420
  421 NELTCDEQAE KSFADGCLSE DGQVLGTYLH GLFDSPDACQ LILRWAGLED AQAIDINAIR 480
  481 EQQLDRLADV LAEHLDLPQL QAILTASVKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1s1mA
Description:	Crystal Structure of E. Coli CTP Synthetase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits