YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372620, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	380 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372620, gi|....

Description	E-value	Query Range	Subject Range
gi\|114845489, gi... - gi\|167039782\|ref\|YP_001662767.1\| transport system permease protein [Thermoanaerobacter sp. X514], gi... gi\|167037070, gi... - gi\|76796307\|ref\|ZP_00778672.1\| transport system permease protein [Thermoanaerobacter ethanolicus ATC... gi\|241884179, gi... - gi\|241903412\|ref\|ZP_04788136.1\| transport system permease protein [Thermoanaerobacter brockii subsp.... gi\|242230699, gi... - gi\|242257758\|ref\|ZP_04802610.1\| transport system permease protein [Thermoanaerobacter sp. X513], gi\|...	248.0	[0..2]	[379..1]
Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii (strain ATCC 43067... Y087_METJA - Putative ABC transporter permease protein MJ0087 OS=Methanocaldococcus jannaschii GN=MJ0087 PE=3 SV=...	246.0	[0..8]	[379..1]
gi\|20089997, gi\|... - gi\|20089997\|ref\|NP_616072.1\| iron ABC transporter, permease protein [Methanosarcina acetivorans C2A]...	245.0	[0..9]	[378..4]
gi\|214034358, gi... - gi\|254479701\|ref\|ZP_05092994.1\| ABC transporter, FeCT family, permease protein [Carboxydibrachium pa... gi\|20808280 - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon... gi\|20516881, gi\|... - gi\|20808280\|ref\|NP_623451.1\| ABC-type cobalamin/Fe3+-siderophores transport systems, permease compon...	245.0	[0..2]	[379..1]
gi\|76167036, gi\|... - gi\|76257950\|ref\|ZP_00765607.1\| transport system permease protein [Chloroflexus aurantiacus J-10-fl],...	245.0	[0..7]	[379..51]
gi\|45358745, gi\|... - gi\|45358745\|ref\|NP_988302.1\| transport system permease protein [Methanococcus maripaludis S2], gi\|45...	244.0	[0..7]	[378..1]
gi\|68185993, gi\|... - gi\|91773082\|ref\|YP_565774.1\| ABC Fe3+-siderophore transporter, inner membrane subunit [Methanococcoi...	243.0	[0..5]	[379..22]
gi\|72395868, gi\|... - gi\|73668706\|ref\|YP_304721.1\| iron ABC transporter, permease protein [Methanosarcina barkeri str. Fus...	241.0	[0..8]	[378..10]
gi\|18144878, gi\|... - gi\|18310199\|ref\|NP_562133.1\| ABC transporter [Clostridium perfringens str. 13], gi\|18144878\|dbj\|BAB8...	240.0	[0..11]	[378..1]

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Predicted Domain #1

Region A:
Residues: [1-380]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISRLKLITL LTPIFTPLTR QQWLMLALVG FTLLTPIAAA SFGAANISFL DVFNVFIDKF  60
   61 SQLFMGENAP STAAMTDRIV MELRLPRILL AFVAGAGLSL AGSVLQTVTR NPLADPYLFG 120
  121 ISSGASFGAV VMLTLFSGSG FFANAGVIAN SGIFSGAEIL AGLQWFSLPF GAFIGASLSV 180
  181 LIVLALSGLG LNSQVERMLL SGVATSFMFG ALTSLLLYFA SPQATASVLF WSLGSFAKAS 240
  241 WSLLILPTIV VLVSFFIILG WKRQIMALQA GDETAHTLGV NVPKLRLNML LLCSLITAIL 300
  301 VATCGGIGFV GLMIPHTVRL LFPGRQPILL TALVGGLFMV WIDVLARCLL GNQELPVGII 360
  361 TASIGSFFFL LILRRRKVAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	2nq2A
Description:	No description for 2nq2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits