YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372592, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372592, gi|....

Description	E-value	Query Range	Subject Range
gi\|213966969, gi... - gi\|213966969\|ref\|ZP_03395119.1\| dienelactone hydrolase family protein [Pseudomonas syringae pv. toma... gi\|28853237, gi\|... - gi\|28869992\|ref\|NP_792611.1\| dienelactone hydrolase family protein [Pseudomonas syringae pv. tomato ... tr\|Q881S6\|Q881S6... - Dienelactone hydrolase family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_28...	209.0	[0..9]	[319..1]
gi\|209759780, gi... - pir\|\|D85959 probable enzyme Z4353 [imported] - Escherichia coli (strain O157:H7, substrain EDL933),... gi\|15803544, gi\|... - gi\|15803544\|ref\|NP_289577.1\| putative enzyme [Escherichia coli O157:H7 EDL933], gi\|12517566\|gb\|AAG58...	205.0	[0..1]	[318..9]
gi\|86161969, gi\|... - gi\|87122741\|ref\|ZP_01078615.1\| putative enzyme [Marinomonas sp. MED121], gi\|86161969\|gb\|EAQ63260.1\| ...	205.0	[0..1]	[318..10]
gi\|77813167, gi\|... - gi\|77813167\|ref\|ZP_00812448.1\| Twin-arginine translocation pathway signal [Shewanella putrefaciens C...	204.0	[0..15]	[318..24]
gi\|120597773, gi... - gi\|82742080\|ref\|ZP_00904784.1\| Twin-arginine translocation pathway signal [Shewanella sp. W3-18-1], ...	204.0	[0..15]	[318..24]
gi\|110643239, gi... - gi\|110643239\|ref\|YP_670969.1\| hydrolase [Escherichia coli 536], gi\|110344831\|gb\|ABG71068.1\| predicte...	203.0	[0..8]	[318..1]
gi\|26249567, gi\|... - gi\|26249567\|ref\|NP_755607.1\| hypothetical protein c3736 [Escherichia coli CFT073], gi\|26109975\|gb\|AA...	203.0	[0..1]	[318..9]
gi\|73857021, gi\|... - gi\|74313544\|ref\|YP_311963.1\| hydrolase [Shigella sonnei Ss046], gi\|73857021\|gb\|AAZ89728.1\| Predicted...	202.0	[0..1]	[318..9]
gi\|91073987, gi\|... - gi\|91212413\|ref\|YP_542399.1\| putative enzyme [Escherichia coli UTI89], gi\|91073987\|gb\|ABE08868.1\| pu... gi\|117625304, gi... - gi\|117625304\|ref\|YP_854505.1\| putative hydrolase [Escherichia coli APEC O1], gi\|115514428\|gb\|ABJ0250... gi\|237706253, gi... - gi\|237706253\|ref\|ZP_04536734.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|218560075, gi... - gi\|218560075\|ref\|YP_002392988.1\| putative enzyme [Escherichia coli S88], gi\|218366844\|emb\|CAR04614.1...	202.0	[0..1]	[318..9]
gi\|78684693, gi\|... - gi\|78684693\|ref\|ZP_00849476.1\| Twin-arginine translocation pathway signal [Shewanella sp. ANA-3], gi...	202.0	[0..13]	[318..13]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDDKPELT TAPSQAIPQE AFDWYDEYAH GIIDRREFMM RLAGLVALGF TLSTLTGALM  60
   61 PNYALAEQVS FNDPTIQASY VKFPSPEGYG EGRGYLVLPS ALL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.522879
Match:	1lzkA
Description:	Heroin esterase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [104-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPGQKAGDPK TLDPTKKAPV VLVVHENRGL NPYIEDVARR LAAKGYIAFA PDALYSLGGY  60
   61 PGNDDAGRAM QASLDRAKIE QDFIAAARFL KSHPQSNGKL GAVGFCFGGY IVNMLAAIIP 120
  121 DELAAGVPFY GTPAVTELRS RVKGPLMLQF AALDQRINDT WAEYEAQLKA NKADYAAYLY 180
  181 PNVNHGFHND STARYDEPTA ELAWARTLDF FGKHLLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1zixA
Description:	Crystal Structure Analysis of the dienelactone hydrolase mutant (E36D, R105H, C123S, G211D, K234N)- 1.8 A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits