YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372568, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372568, gi|....

Description	E-value	Query Range	Subject Range
gi\|91203275 - gi\|91203275\|emb\|CAJ72914.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	229.0	[0..1]	[213..311]
gi\|119865539, gi... - gi\|119946935\|ref\|YP_944615.1\| hybrid sensor and regulator fused [Psychromonas ingrahamii 37], gi\|119...	224.0	[0..1]	[212..446]
gi\|71839290, gi\|... - gi\|71839290\|ref\|ZP_00679041.1\| PAS [Pelobacter propionicus DSM 2379], gi\|71740223\|gb\|EAO35390.1\| PAS...	223.0	[0..1]	[206..639]
gi\|68186676, gi\|... - gi\|91772668\|ref\|YP_565360.1\| PAS/PAC sensor signal transduction histidine kinase [Methanococcoides b...	222.0	[0..1]	[204..233]
gi\|42521923, gi\|... - gi\|42521923\|ref\|NP_967303.1\| sensory transduction histidine kinase [Bdellovibrio bacteriovorus HD100...	218.0	[0..1]	[204..761]
gi\|83311112, gi\|... - gi\|83311112\|ref\|YP_421376.1\| Signal transduction histidine kinase [Magnetospirillum magneticum AMB-1...	218.0	[0..1]	[209..628]
gi\|86609102 - gi\|86609102\|ref\|YP_477864.1\| sensory box histidine kinase/response regulator [Cyanobacteria bacteriu... gi\|86557644, gi\|... - gi\|86609102\|ref\|YP_477864.1\| sensory box histidine kinase/response regulator [Synechococcus sp. JA-2...	218.0	[0..1]	[208..823]
gi\|110646414, gi... - gi\|110833303\|ref\|YP_692162.1\| sensor histidine kinase [Alcanivorax borkumensis SK2], gi\|110646414\|em...	217.0	[0..1]	[209..433]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLDQNTPLA RMRFTLELIR PQIDAHYAKR LNEDIEDIEQ LAANYLSFAR LEHKEEALTQ  60
   61 ESQSLAIFMD KLAQKYAMYR PQLDIQFHHQ SQQAHFDPIA MTIATQNLIQ NAMRFAHHKI 120
  121 HVHFYQEAGI NRFSVEDDGP GFEGKGKKLF AAFERDSQQS DTSGYGLGLY IVKKIATWHY 180
  181 GQLELSRSQT LGGAEISIIW DDRLLPKADI NSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	2c2aA
Description:	Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits