YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346580, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346580, gi|....

Description	E-value	Query Range	Subject Range
gi\|59481766, gi\|... - gi\|59713518\|ref\|YP_206293.1\| osmotically inducible protein C [Vibrio fischeri ES114], gi\|59481766\|gb...	157.0	[0..1]	[140..1]
gi\|84389399, gi\|... - gi\|84389399\|ref\|ZP_00991205.1\| osmotically inducible protein C [Vibrio splendidus 12B01], gi\|8437691...	157.0	[0..1]	[140..1]
gi\|148871216, gi... - gi\|153832650\|ref\|ZP_01985317.1\| conserved hypothetical protein [Vibrio harveyi HY01], gi\|148871216\|g... gi\|156975994, gi... - gi\|156975994\|ref\|YP_001446900.1\| redox protein, regulator of disulfide bond formation [Vibrio harvey... gi\|91191862, gi\|... - gi\|91223049\|ref\|ZP_01258315.1\| putative organic hydroperoxide resistance protein [Vibrio alginolytic...	156.0	[0..1]	[140..1]
gi\|85837909, gi\|... - gi\|86145010\|ref\|ZP_01063342.1\| osmotically inducible protein C [Vibrio sp. MED222], gi\|85837909\|gb\|E...	155.0	[0..1]	[140..1]
gi\|116187078, gi... - gi\|75857459\|ref\|ZP_00765074.1\| COG1764: Predicted redox protein, regulator of disulfide bond formati...	154.0	[0..1]	[140..1]
gi\|27367006, gi\|... - gi\|27367006\|ref\|NP_762533.1\| redox protein, regulator of disulfide bond formation [Vibrio vulnificus... gi\|37676785, gi\|... - gi\|37676785\|ref\|NP_937181.1\| redox protein [Vibrio vulnificus YJ016], gi\|37201328\|dbj\|BAC97151.1\| pr...	152.0	[0..1]	[140..1]
gi\|113910433, gi... - gi\|160876728\|ref\|YP_001556044.1\| OsmC family protein [Shewanella baltica OS195], gi\|160862250\|gb\|ABX... gi\|151366626, gi... - gi\|153002008\|ref\|YP_001367689.1\| OsmC family protein [Shewanella baltica OS185], gi\|151366626\|gb\|ABS...	151.0	[0..1]	[140..1]
gi\|82719634, gi\|... - gi\|82743022\|ref\|ZP_00905692.1\| organic hydroperoxide resistance protein [Shewanella sp. W3-18-1], gi... gi\|146294145, gi... - gi\|77813992\|ref\|ZP_00813261.1\| OsmC-like protein [Shewanella putrefaciens CN-32], gi\|77810986\|gb\|EAO...	151.0	[0..1]	[141..1]
gi\|75815189 - gi\|75815189\|ref\|ZP_00745711.1\| COG1764: Predicted redox protein, regulator of disulfide bond formati...	150.0	[0..1]	[140..1]
gi\|117921750, gi... - gi\|78684667\|ref\|ZP_00849450.1\| organic hydroperoxide resistance protein [Shewanella sp. ANA-3], gi\|7...	150.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLYETRAT ASAGRQGQVS TDDGLLNVAL AYPKAMGGSG LATNPEQLFA AGYAACFSNA  60
   61 ILHVAKIAKV AITEAPVSAV VGIGANETGG FALTVALEVS LDLPQADAQA LVRHAHQVCP 120
  121 YSNATRNNID VKLSVNGTAL N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	2bjoA
Description:	No description for 2bjoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits