YRC Public Data Repository - Protein Structure Prediction

Protein:	FRDA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	596 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRDA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|117921756, gi... - gi\|78684661\|ref\|ZP_00849444.1\| Flavocytochrome c [Shewanella sp. ANA-3], gi\|78507598\|gb\|EAP21108.1\| ...	419.0	[0..1]	[596..1]
gi\|82406927, gi\|... - gi\|82495091\|ref\|ZP_00880669.1\| Flavocytochrome c [Shewanella sp. MR-4], gi\|82406927\|gb\|EAP47589.1\| F...	418.0	[0..1]	[596..1]
gi\|78511804, gi\|... - gi\|78688804\|ref\|ZP_00853471.1\| Flavocytochrome c [Shewanella sp. MR-7], gi\|78511804\|gb\|EAP25159.1\| F...	417.0	[0..1]	[596..1]
gi\|120600061, gi... - gi\|82740511\|ref\|ZP_00903250.1\| Flavocytochrome c [Shewanella sp. W3-18-1], gi\|82722115\|gb\|EAP56942.1... gi\|145563699, gi... - gi\|77813106\|ref\|ZP_00812387.1\| Flavocytochrome c [Shewanella putrefaciens CN-32], gi\|77811941\|gb\|EAO...	413.0	[0..1]	[595..1]
gi\|113947331, gi... - gi\|160876734\|ref\|YP_001556050.1\| flavocytochrome c [Shewanella baltica OS195], gi\|160862256\|gb\|ABX50... gi\|68520872, gi\|... - gi\|68541417\|ref\|ZP_00581161.1\| Flavocytochrome c [Shewanella baltica OS155], gi\|68520872\|gb\|EAN44372... gi\|153002014, gi... - gi\|153002014\|ref\|YP_001367695.1\| flavocytochrome c [Shewanella baltica OS185], gi\|151366632\|gb\|ABS09... gi\|217499724, gi... - gi\|217974589\|ref\|YP_002359340.1\| flavocytochrome c [Shewanella baltica OS223], gi\|217499724\|gb\|ACK47...	408.0	[0..1]	[596..1]
gi\|6573307, gi\|6... - gi\|6573310\|pdb\|1D4C\|D Chain D, Crystal Structure Of The Uncomplexed Form Of The Flavocytochrome C Fu...	394.0	[0..25]	[596..1]
FRD2_SHEFN - Fumarate reductase flavoprotein subunit OS=Shewanella frigidimarina (strain NCIMB 400) GN=ifcA PE=1 ... FRD2_SHEFR - (Q9Z4P0) Fumarate reductase flavoprotein subunit precursor (EC 1.3.99.1) (Iron(III)-induced flavocyt...	369.0	[0..4]	[595..1]
gi\|119773749, gi... - gi\|68546555\|ref\|ZP_00586101.1\| Flavocytochrome c [Shewanella amazonensis SB2B], gi\|68515633\|gb\|EAN39...	368.0	[0..1]	[596..1]
gi\|127514040, gi... - gi\|78366634\|ref\|ZP_00836912.1\| Flavocytochrome c [Shewanella sp. PV-4], gi\|78361209\|gb\|EAP03035.1\| F...	355.0	[0..6]	[596..1]

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Predicted Domain #1

Region A:
Residues: [1-596]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTRKIQKTA LAMLISGAMA GTAYAAPEVL ADFHGEMGGC DSCHVSDKGG VTNDNLTHEN  60
   61 GQCVSCHGDL KELAAAAPKD KVSPHKSHLI GEIACTSCHK GHEKSVAYCD ACHSFGFDMP 120
  121 FGGKWERKFV PVDADKAAQD KAIAAGVKET TDVVIIGSGG AGLAAAVSAR DAGAKVILLE 180
  181 KEPIPGGNTK LAAGGMNAAE TKPQAKLGIE DKKQIMIDDT MKGGRNINDP ELVKVLANNS 240
  241 SDSIDWLTSM GADMTDVGRM GGASVNRSHR PTGGAGVGAH VAQVLWDNAV KRGTDIRLNS 300
  301 RVVRILEDAS GKVTGVLVKG EYTGYYVIKA DAVVIAAGGF AKNNERVSKY DPKLKGFKAT 360
  361 NHPGATGDGL DVALQAGAAT RDLEYIQAHP TYSPAGGVMI TEAVRGNGAI VVNREGNRFM 420
  421 NEITTRDKAS AAILQQKGES AYLVFDDSIR KSLKAIEGYV HLNIVKEGKT IEELAKQIDV 480
  481 PAAELAKTVT AYNGFVKSGK DAQFERPDLP RELVVAPFYA LEIAPAVHHT MGGLVIDTKA 540
  541 EVKSEKTGKP ITGLYAAGEV TGGVHGANRL GGNAISDIVT YGRIAGASAA KFAKDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	1d4cA
Description:	Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain; Flavocytochrome c3 (respiratory fumarate reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	4.3382494647592	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	4.3382494647592	bayes_pls_golite062009
electron carrier activity	4.04320491706307	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	3.66002057624971	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	2.52207884417451	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.11247286526577	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
oxidoreductase activity, acting on other nitrogenous compounds as donors	1.68706267261293	bayes_pls_golite062009
binding	1.68568452669871	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	1.39701083369255	bayes_pls_golite062009
oxidoreductase activity	1.1113712021302	bayes_pls_golite062009
nitrate reductase activity	0.80169943324397	bayes_pls_golite062009
fumarate reductase (NADH) activity	0.65260793370113	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
coenzyme binding	0.424849261981	bayes_pls_golite062009
catalytic activity	0.202301774983557	bayes_pls_golite062009
protein binding	0.0171008177759692	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: