YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346570, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	329 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346570, gi|....

Description	E-value	Query Range	Subject Range
SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1 SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / ...	347.0	[0..3]	[328..2]
gi\|114558531 - gi\|114558531\|ref\|XP_001141039.1\| PREDICTED: phosphoglycerate dehydrogenase isoform 5 [Pan troglodyte...	340.0	[0..4]	[328..48]
gi\|26345686 - gi\|26345686\|dbj\|BAC36494.1\| unnamed protein product [Mus musculus]	340.0	[0..4]	[328..8]
gi\|5771523, gi\|2... - gi\|5771523\|gb\|AAD51415.1\|AF171237_1 3-phosphoglycerate dehydrogenase [Homo sapiens], gi\|2674062\|gb\|A...	339.0	[0..4]	[328..8]
gi\|67971102 - gi\|67971102\|dbj\|BAE01893.1\| unnamed protein product [Macaca fascicularis]	336.0	[0..4]	[328..8]
SERA_RAT - D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3	336.0	[0..4]	[328..8]

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Predicted Domain #1

Region A:
Residues: [1-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGFFSAKH YDMQHFNRTN AAFDAQIEYF DYRLCMQTVK LAEGFEVVCA FVNDSLCEEV  60
   61 LVELAKGGTK IIAMRCAGFN NVDLVAAKRL GMQVVNVPAY SPESVAEHTV ALMLTLNRKI 120
  121 HKAYQRTRDA NFSLEGLVGF NMFGKTVGVI GTGKIGVATI KVLLGFGCKV IAFDPYPNPA 180
  181 VEALDVEYQD LDTIYATSDI ISLHCPLTPD NHHLLNKDSF AKMKPGVMVI NTSRGGLLNA 240
  241 FDAMEALKLG QIGALGLDVY ENEKELFFED KSNQIIQDDV FRRLSACHNV IFTGHQAFLT 300
  301 EEALGAIANT TLSNVQAVLA GKRCGNELF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.69897
Match:	2g76A
Description:	No description for 2g76A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits