YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346569, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346569, gi|....

Description	E-value	Query Range	Subject Range
gi\|68188885, gi\|... - gi\|91776952\|ref\|YP_546708.1\| carboxymethylenebutenolidase [Methylobacillus flagellatus KT], gi\|91710...	118.0	[0..1]	[172..1]
gi\|113474272, gi... - gi\|71675369\|ref\|ZP_00673114.1\| Carboxymethylenebutenolidase [Trichodesmium erythraeum IMS101], gi\|71...	117.0	[0..1]	[172..1]
gi\|82495093, gi\|... - gi\|82495093\|ref\|ZP_00880671.1\| similar to Dienelactone hydrolase and related enzymes [Shewanella sp....	115.0	[0..1]	[172..1]
gi\|117921758, gi... - gi\|78684659\|ref\|ZP_00849442.1\| similar to Dienelactone hydrolase and related enzymes [Shewanella sp....	115.0	[0..1]	[172..1]
gi\|78511806, gi\|... - gi\|78688806\|ref\|ZP_00853473.1\| similar to Dienelactone hydrolase and related enzymes [Shewanella sp....	115.0	[0..1]	[172..1]
gi\|75909937, gi\|... - gi\|75909937\|ref\|YP_324233.1\| dienelactone hydrolase [Anabaena variabilis ATCC 29413], gi\|75703662\|gb...	114.0	[0..3]	[172..6]
gi\|25288909 - pir\|\|AB1941 hypothetical protein alr1077 [imported] - Nostoc sp. (strain PCC 7120) gi\|17130423, gi\|... - gi\|17228572\|ref\|NP_485120.1\| hypothetical protein alr1077 [Nostoc sp. PCC 7120], gi\|17130423\|dbj\|BAB...	113.0	[0..3]	[172..6]
gi\|23126223, gi\|... - gi\|23126223\|ref\|ZP_00108125.1\| COG0412: Dienelactone hydrolase and related enzymes [Nostoc punctifor...	112.0	[0..1]	[172..1]
gi\|69166440, gi\|... - gi\|69949816\|ref\|ZP_00637780.1\| Dienelactone hydrolase [Shewanella frigidimarina NCIMB 400], gi\|69166...	112.0	[0..1]	[172..1]
gi\|68546557, gi\|... - gi\|68546557\|ref\|ZP_00586103.1\| Dienelactone hydrolase [Shewanella amazonensis SB2B], gi\|68515635\|gb\|...	110.0	[0..1]	[172..1]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVTQQTQDI NTPSGLMRTY LYRPDASGQF PCIIFYSEIF QQTAPIARTA TILAGHGFVV  60
   61 LVPEVFHELN PIGTVLAYDD VGKDKGNADK FAKPLEQHDS DTQALIDFAR QQSYCTGHVG 120
  121 SMGVCIGGHL AYRAALNPKI LGAFCLYPTD IHSNTLPCTY GNDSLSRTGD IR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	1zi6A
Description:	Crystal Structure Analysis of the dienelactone hydrolase (C123S) mutant- 1.7 A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits