YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346508, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346508, gi|....

Description	E-value	Query Range	Subject Range
gi\|73964705 - gi\|73964705\|ref\|XP_848528.1\| PREDICTED: similar to CG30394-PB, isoform B isoform 3 [Canis familiaris...	197.0	[0..27]	[418..6]
gi\|55727716 - gi\|55727716\|emb\|CAH90609.1\| hypothetical protein [Pongo abelii] S38AA_PONAB - Putative sodium-coupled neutral amino acid transporter 10 OS=Pongo abelii GN=SLC38A10 PE=2 SV=1	196.0	[0..27]	[430..6]
gi\|76645434 - gi\|76645434\|ref\|XP_887510.1\| PREDICTED: similar to CG30394-PB, isoform B isoform 3 [Bos taurus]	196.0	[0..27]	[430..6]
gi\|123229690, gi... - gi\|74213375\|dbj\|BAE35504.1\| unnamed protein product [Mus musculus], gi\|148702783\|gb\|EDL34730.1\| RIKE...	195.0	[0..26]	[425..5]
gi\|70729999, gi\|... - gi\|70729999\|ref\|YP_259738.1\| serine transporter SdaC [Pseudomonas fluorescens Pf-5], gi\|68344298\|gb\|...	194.0	[0..1]	[430..69]
S38AA_XENLA - Putative sodium-coupled neutral amino acid transporter 10 OS=Xenopus laevis GN=slc38a10 PE=2 SV=1	189.0	[0..27]	[429..3]
gi\|91084137 - gi\|91084137\|ref\|XP_969912.1\| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]	188.0	[0..8]	[402..2462]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKDAISVLE TPQSTQESTT RRLPWTRQDT TWMLSLFGTA VGAGILFLPI NAGMGGFWPL  60
   61 VLMAIIIGPM TYLAHRGLSR FVCSSSIPGS DITQVVEEHF GIGAGKAITL LYFLAIYPIV 120
  121 LIYGVGITNT VDSFIVNQLG MASPPRFLLS GILIFGMMAV MVAGEQFMLK VTQLLVYPLV 180
  181 GILAFMSVYL IPEWKMDALQ VVPETGAFLG TVWLTIPVLV FAFNHSPAIS QFSVSLKRDH 240
  241 GANAARKADV ILRNTSMMLV GFVMLFVFSC VLSLSPEQLA EAKAKNLPIL SYLANVHDSG 300
  301 FVSYFGPFIA FIAIVSSFFG HYMGATEGMK GIIVKQLRSS KKQVSEDKLN KFILVFMFAT 360
  361 IWGVAIKNPS ILGMIEALGG PVIAAILYLM PMYAVYKVPA LKAYRHRISN VFVVIAGLLA 420
  421 MTAILFGLLS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits