YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346505, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	855 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346505, gi|....

Description	E-value	Query Range	Subject Range
gi\|113969104, gi... - gi\|82495139\|ref\|ZP_00880717.1\| aculeacin A acylase [Shewanella sp. MR-4], gi\|82406975\|gb\|EAP47637.1\|...	830.0	[0..1]	[855..1]
gi\|78688853, gi\|... - gi\|78688853\|ref\|ZP_00853520.1\| aculeacin A acylase [Shewanella sp. MR-7], gi\|78511853\|gb\|EAP25208.1\|...	830.0	[0..1]	[855..1]
gi\|78684613, gi\|... - gi\|78684613\|ref\|ZP_00849396.1\| aculeacin A acylase [Shewanella sp. ANA-3], gi\|78507550\|gb\|EAP21060.1...	828.0	[0..1]	[855..1]
gi\|125996215, gi... - gi\|68541127\|ref\|ZP_00580874.1\| Peptidase S45, penicillin amidase [Shewanella baltica OS155], gi\|6852...	826.0	[0..1]	[853..1]
gi\|120600109, gi... - gi\|82742066\|ref\|ZP_00904771.1\| aculeacin A acylase [Shewanella sp. W3-18-1], gi\|82720594\|gb\|EAP55455...	815.0	[0..1]	[853..1]
gi\|77811898, gi\|... - gi\|77813063\|ref\|ZP_00812344.1\| Peptidase S45, penicillin amidase [Shewanella putrefaciens CN-32], gi...	813.0	[0..1]	[853..1]
gi\|114561952, gi... - gi\|69949135\|ref\|ZP_00637195.1\| Peptidase S45, penicillin amidase [Shewanella frigidimarina NCIMB 400...	757.0	[0..1]	[853..1]
gi\|68516592, gi\|... - gi\|68545563\|ref\|ZP_00585113.1\| Peptidase S45, penicillin amidase [Shewanella amazonensis SB2B], gi\|6...	708.0	[0..1]	[849..2]
gi\|49329663, gi\|... - gi\|49478107\|ref\|YP_037354.1\| penicillin acylase II [Bacillus thuringiensis serovar konkukian str. 97...	707.0	[0..8]	[853..22]
gi\|49186092, gi\|... - gi\|49186092\|ref\|YP_029344.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis str. ... gi\|229603249, gi... - gi\|229603249\|ref\|YP_002867502.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis s... gi\|47503763, gi\|... - gi\|47528615\|ref\|YP_019964.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis str. ... gi\|254742509 - gi\|254742509\|ref\|ZP_05200194.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|30263241, gi\|... - gi\|30263241\|ref\|NP_845618.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis str. ... gi\|254738325 - gi\|254738325\|ref\|ZP_05196028.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|254723260 - gi\|254723260\|ref\|ZP_05185048.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|254685854 - gi\|254685854\|ref\|ZP_05149713.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|254761156 - gi\|254761156\|ref\|ZP_05213180.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|190564617, gi... - gi\|190564617\|ref\|ZP_03017538.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis Ts... gi\|177649845, gi... - gi\|177649845\|ref\|ZP_02932846.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|170130130, gi... - gi\|170705275\|ref\|ZP_02895740.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|170671188, gi... - gi\|170684928\|ref\|ZP_02876153.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|167637311, gi... - gi\|167637311\|ref\|ZP_02395591.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st... gi\|167632475, gi... - gi\|167632475\|ref\|ZP_02390802.1\| beta-lactam antibiotic acylase family protein [Bacillus anthracis st...	705.0	[0..8]	[853..22]

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Predicted Domain #1

Region A:
Residues: [1-855]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNKLMIAM GMACGVMLTG CNDSEDSTPP TEPETKLQTF APNGLLKANI RRTTYGVPHI  60
   61 QADNLESLGF GSGYAQAQDN LCVLADGFIK ANSQRSMYFG PHASIDFTTG QPTAEDNGNL 120
  121 ISDFAYKALK IRQQAEAKWP QFSERSRALI QGFTAGYNQY LADVEAGKQT AEPFCGGQPW 180
  181 VKPIVPEDVV TYLFSIALLP GAANFLDLIF YANPGDGQEY MPRIVGPAPS QEQTAFVSDM 240
  241 QSKLIARAAR ITTPETNPRD LGSNGWGLGK DKTENGRGMV LGNPHFPHTG NLRFWQSHIT 300
  301 IPGHLDMMGG SLVGMPGPIN IGFNKDLAWT HTFSTAEHFV MYNLELVSGD RLQYLFDGKP 360
  361 MPINKETVSI IVNAGPAGMV VAEKDIYTTA KGPMVEAPPT LAPFGWDDGS AFMLQDANMA 420
  421 TMDPVDHWLA MNLATNKDEF QQAFKDYDGV IFNNTMYADK EGNAFYIDDS TVPGLSESAV 480
  481 VLLKTSPDIK AAKQKAGFTI LPGNTSLFSF SGPNPYERAP KLERSDFVQN SNDSFWSTNL 540
  541 NEPLTYFSPM YGQEAGQLSL RTRMGLTLMQ DAAGTDGKFN LQELEAAVLS NRSYLAELVL 600
  601 PALIAQCEAQ GSTPVVVSAS LSKDLTSACA ALKAWNGKQD NDSKGGALLR EFAHLFNQKT 660
  661 MLTKGFDPAN AATTPNTLAT DGSVLVALAQ AALNLESAGF ALDAPLGEVQ FVEKSLPDGT 720
  721 ASGVRLPWPG THNAEGGFNV FSTSLSGDDT LIPQHKYAPL KDVVTGKAMG SGMTAKGYQI 780
  781 RYGSSWMMAV SFTDEGPVAR GILTYSQSSN ILSPSFTDQS DLYSSSKSFR PLLFKEADIA 840
  841 PAVVSTTELM LQKAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	147.0
Match:	1oqzA
Description:	Crystal Structures of Glutaryl 7-Aminocephalosporanic Acid Acylase: Insight into Autoproteolytic Activation
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.56707079610396	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: