YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346456, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	295 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346456, gi|....

Description	E-value	Query Range	Subject Range
gi\|48765468 - ref\|ZP_00270018.1\| COG3954: Phosphoribulokinase [Rhodospirillum rubrum] gi\|83593739, gi\|... - gi\|83593739\|ref\|YP_427491.1\| phosphoribulokinase [Rhodospirillum rubrum ATCC 11170], gi\|83576653\|gb\|...	300.0	[0..1]	[288..1]
gi\|7861553 - gi\|7861553\|dbj\|BAA95690.1\| phosphoribulokinase [Hydrogenophilus thermoluteolus]	299.0	[0..1]	[288..1]
gi\|77697740, gi\|... - gi\|77742351\|ref\|ZP_00810829.1\| Phosphoribulokinase [Rhodopseudomonas palustris BisA53], gi\|77697740\|...	296.0	[0..1]	[287..1]
gi\|167367069, gi... - gi\|192293484\|ref\|YP_001994089.1\| Phosphoribulokinase [Rhodopseudomonas palustris TIE-1], gi\|19228723... cbbP - cbbP phosphoribulokinase (phosphopentokinase) (PRK) 5228833:5229708 reverse MW:33245	296.0	[0..1]	[289..1]
gi\|27350838, gi\|... - gi\|27377693\|ref\|NP_769222.1\| putative phosphoribulokinase protein [Bradyrhizobium japonicum USDA 110... gi\|24559823 - gi\|24559823\|gb\|AAN61145.1\| CbbP [Bradyrhizobium japonicum]	296.0	[0..1]	[289..1]
gi\|125575, gi\|141910 - gi\|141910\|gb\|AAA21959.1\| phosphoribulokinase P, gi\|125575\|sp\|P19923.3\|KPPR2_RALEH RecName: Full=Phos... KPPR2_CUPNH - Phosphoribulokinase, chromosomal OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier... gi\|78200, gi\|125... - pir\|\|JQ0399 phosphoribulokinase (EC 2.7.1.19) [similarity] - Alcaligenes eutrophus, gi\|141910\|gb\|AA...	296.0	[0..1]	[288..1]
KPPR1_CUPNH - Phosphoribulokinase, plasmid OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337... gi\|141907, gi\|125574 - gi\|141907\|gb\|AAA21957.1\| phosphoribulokinase P, gi\|125574\|sp\|P19924.3\|KPPR1_RALEH RecName: Full=Phos... gi\|32527420, gi\|... - pir\|\|JQ0400 phosphoribulokinase (EC 2.7.1.19) [similarity] - Alcaligenes eutrophus plasmid pHG1, gi...	295.0	[0..1]	[288..1]
gi\|68525689, gi\|... - gi\|94310454\|ref\|YP_583664.1\| phosphoribulokinase/uridine kinase [Ralstonia metallidurans CH34], gi\|9...	295.0	[0..1]	[288..1]
gi\|78390662, gi\|... - gi\|90424395\|ref\|YP_532765.1\| phosphoribulokinase [Rhodopseudomonas palustris BisB18], gi\|90106409\|gb...	295.0	[0..1]	[287..1]
gi\|90413577, gi\|... - gi\|90413577\|ref\|ZP_01221567.1\| Putative phosphoribulokinase [Photobacterium profundum 3TCK], gi\|9032...	294.0	[0..1]	[287..1]

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Predicted Domain #1

Region A:
Residues: [1-295]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKHPIIAV TGSSGAGTTT TTTAFSHIFR QLGINAAFVE GDSFHHYTRA EMEVMIRKSQ  60
   61 AENRNLSYFG PEANNFARLE QCFRDYGATG QGETRSYLHT FDEAVPFNQM PGTFTQWRPL 120
  121 PENTDMLYYE GLHGGVVTGD ANVAQHVDLL IGMVPIVNLE WIQKIIRDTS ERGHSREKVM 180
  181 GSIVRSMDDY IKHMTPQFSR THINFQRVPT VDTSNPFSAK DIPSLDESFV VIRFRGINNV 240
  241 DFPYYLSMIQ GSFMSRVNTL VVPGGKMSLA MELILTPLIK DLMEKRQQLN SPQAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	1a7jA
Description:	PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
hydrolase activity	0.310795123901245	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: