YRC Public Data Repository - Protein Structure Prediction

Protein:	SFSA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SFSA_SHEON.

Description	E-value	Query Range	Subject Range
SFSA_SHESR - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain MR-7) GN=sfsA PE=3 SV=1	398.0	[0..1]	[234..1]
SFSA_SHESM - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain MR-4) GN=sfsA PE=3 SV=1	398.0	[0..1]	[234..1]
SFSA_SHESA - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain ANA-3) GN=sfsA PE=3 SV=1	387.0	[0..1]	[234..1]
SFSA_SHEB5 - Sugar fermentation stimulation protein homolog OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) ...	386.0	[0..1]	[234..1]
SFSA_SHEB9 - Sugar fermentation stimulation protein homolog OS=Shewanella baltica (strain OS195) GN=sfsA PE=3 SV=...	385.0	[0..1]	[234..1]
SFSA_SHESW - Sugar fermentation stimulation protein homolog OS=Shewanella sp. (strain W3-18-1) GN=sfsA PE=3 SV=1 SFSA_SHEPC - Sugar fermentation stimulation protein homolog OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-4...	379.0	[0..1]	[234..1]
SFSA_SHIF8 - Sugar fermentation stimulation protein A OS=Shigella flexneri serotype 5b (strain 8401) GN=sfsA PE=3...	379.0	[0..1]	[234..1]
gi\|30061706, gi\|... - gi\|30061706\|ref\|NP_835877.1\| sugar fermentation stimulation protein A [Shigella flexneri 2a str. 245... gi\|24111584, gi\|... - gi\|24111584\|ref\|NP_706094.1\| sugar fermentation stimulation protein A [Shigella flexneri 2a str. 301... SFSA_SHIFL - Sugar fermentation stimulation protein A OS=Shigella flexneri GN=sfsA PE=3 SV=1	378.0	[0..1]	[234..1]
gi\|191166317, gi... - gi\|75230491\|ref\|ZP_00716972.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|124499784, gi... - gi\|124529628\|ref\|ZP_01700572.1\| sugar fermentation stimulation protein [Escherichia coli B], gi\|1244... gi\|194428286, gi... - gi\|75210471\|ref\|ZP_00710622.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... SFSA_ECOHS - Sugar fermentation stimulation protein A OS=Escherichia coli O9:H4 (strain HS) GN=sfsA PE=3 SV=1 SFSA_ECO24 - Sugar fermentation stimulation protein A OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sfs... gi\|168751365, gi... - gi\|188014565\|gb\|EDU52687.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|168764349, gi... - gi\|189365656\|gb\|EDU84072.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|168755758, gi... - gi\|189357003\|gb\|EDU75422.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|188490105, gi... - gi\|75512022\|ref\|ZP_00734617.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|192931086, gi... - gi\|75258863\|ref\|ZP_00730253.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|193067728, gi... - gi\|75238851\|ref\|ZP_00722833.1\| COG1489: DNA-binding protein, stimulates sugar fermentation [Escheric... gi\|208738336, gi... - gi\|208818213\|ref\|ZP_03258533.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... gi\|208734880, gi... - gi\|208813603\|ref\|ZP_03254932.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... SFSA_ECOSE - Sugar fermentation stimulation protein A OS=Escherichia coli (strain SE11) GN=sfsA PE=3 SV=1 SFSA_ECO5E - Sugar fermentation stimulation protein A OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sfsA ... SFSA_ECO8A - Sugar fermentation stimulation protein A OS=Escherichia coli O8 (strain IAI1) GN=sfsA PE=3 SV=1 gi\|217325301, gi... - gi\|217325301\|ref\|ZP_03441385.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... SFSA_ECO55 - Sugar fermentation stimulation protein A OS=Escherichia coli (strain 55989 / EAEC) GN=sfsA PE=3 SV=1 gi\|187767676, gi... - gi\|187767676\|gb\|EDU31520.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|168770383, gi... - gi\|189360671\|gb\|EDU79090.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|189371136, gi... - gi\|189371136\|gb\|EDU89552.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|189000440, gi... - gi\|189000440\|gb\|EDU69426.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... SFSA_ECODH - Sugar fermentation stimulation protein A OS=Escherichia coli (strain K12 / DH10B) GN=sfsA PE=3 SV=1 gi\|189375686, gi... - gi\|189375686\|gb\|EDU94102.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str. EC... gi\|208729149, gi... - gi\|208809348\|ref\|ZP_03251685.1\| sugar fermentation stimulation protein [Escherichia coli O157:H7 str... gi\|195938172 - gi\|195938172\|ref\|ZP_03083554.1\| sugar fermentation stimulation protein A [Escherichia coli O157:H7 s... gi\|15829404, gi\|... - gi\|15829404\|ref\|NP_308177.1\| sugar fermentation stimulation protein A [Escherichia coli O157:H7 str.... EG10949 - sugar fermentation stimulation protein A / Sugar fermentation stimulation protein A; overexpression ... SFSA_ECO57 - Sugar fermentation stimulation protein A OS=Escherichia coli O157:H7 GN=sfsA PE=3 SV=1 gi\|89107027, gi\|... - gi\|89107027\|ref\|AP_000807.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... EG10949 - sugar fermentation stimulation protein A / Sugar fermentation stimulation protein A; overexpression ... gi\|15799830, gi\|... - gi\|15799830\|ref\|NP_285842.1\| sugar fermentation stimulation protein A [Escherichia coli O157:H7 EDL9... SFSA_ECOBW - Sugar fermentation stimulation protein A OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=sfsA ... gi\|226840670, gi... - gi\|254037564\|ref\|ZP_04871641.1\| sugar fermentation stimulation protein [Escherichia sp. 1_1_43], gi\|... gi\|254791281, gi... - gi\|254791281\|ref\|YP_003076118.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... SFSA_ECOLC - Sugar fermentation stimulation protein A OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) ... SFSA_ECOLI - Sugar fermentation stimulation protein A - Escherichia coli	378.0	[0..1]	[234..1]
SFSA_SHELP - Sugar fermentation stimulation protein homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) G...	377.0	[0..1]	[234..1]

Back

Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFTPALKPG KLLKRYKRFL ADVQLEDGSE ITVHCPNTGS MRNCLFPGET LWFSTSSNTK  60
   61 RKYAHTWELM TTPTGALIGI HSGNANALVE EALNKGIITE LTGYDSLRRE VKYGDENSRI 120
  121 DILLECAQKT ACYIEVKSCT LQENGQGYF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [150-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PDAVSLRGQK HLRELMHMAS LGHRAVLLFV VQHTDIMSVA PAAHIDPEYA NLLKKSVLSG  60
   61 VEVLAYRCEI SPSEIHLAQS CPVRV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits