YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372460, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372460, gi|....

Description	E-value	Query Range	Subject Range
gi\|116183347, gi... - gi\|75853807\|ref\|ZP_00761565.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Vibrio ...	227.0	[0..1]	[156..1]
gi\|28807503 - gi\|28807503\|dbj\|BAC60768.1\| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase [Vi... gi\|28899279, gi\|... - gi\|28899279\|ref\|NP_798884.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase [V... gi\|153840011, gi... - gi\|153840011\|ref\|ZP_01992678.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase ...	226.0	[0..1]	[156..1]
gi\|91187824, gi\|... - gi\|91228641\|ref\|ZP_01262558.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase ...	225.0	[0..1]	[156..1]
gi\|71848417, gi\|... - gi\|71908796\|ref\|YP_286383.1\| 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Dechloromonas arom...	224.0	[0..1]	[158..1]
gi\|82775534, gi\|... - gi\|82775534\|ref\|YP_401881.1\| 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [Shi...	224.0	[0..1]	[155..1]
gi\|227884944, gi... - gi\|227884944\|ref\|ZP_04002749.1\| 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [... gi\|218688019, gi... - gi\|218688019\|ref\|YP_002396231.1\| 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase ... gi\|26246086, gi\|... - gi\|26246086\|ref\|NP_752125.1\| 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [Esc...	224.0	[0..1]	[157..1]
gi\|75240267, gi\|... - gi\|75240267\|ref\|ZP_00724214.1\| COG0801: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Escheri... gi\|110640363, gi... - gi\|110640363\|ref\|YP_668091.1\| 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase [Es... gi\|215263374, gi... - gi\|215485302\|ref\|YP_002327733.1\| 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase ...	223.0	[0..1]	[157..1]
gi\|24377344, gi\|... - gi\|24379413\|ref\|NP_721368.1\| putative 2-amino-4-hydroxy-6-hydroxymethylpteridine pyrophosphokinase [... gi\|254997475 - gi\|254997475\|dbj\|BAH88076.1\| putative 2-amino-4-hydroxy-6- hydroxymethylpteridine pyrophosphokinase ...	223.0	[0..1]	[155..1]
gi\|94992395, gi\|... - gi\|94992395\|ref\|YP_600494.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St... gi\|71853419, gi\|... - gi\|71910637\|ref\|YP_282187.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St... HPPK_STRP1 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase OS=Streptococcus pyogenes seroty... HPPK_STRPY - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase OS=Streptococcus pyogenes GN=fol... gi\|13622239, gi\|... - gi\|15675083\|ref\|NP_269257.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St... gi\|94988573, gi\|... - gi\|94988573\|ref\|YP_596674.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St... gi\|94547879, gi\|... - gi\|94994371\|ref\|YP_602469.1\| 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase [St...	223.0	[0..1]	[162..1]
gi\|27365006, gi\|... - gi\|27365006\|ref\|NP_760534.1\| 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Vibrio vulnificus ...	222.0	[0..1]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQVFVALGA NLEDPKAQLD NALMALSSLA ENQSLKVSPY YHSTPMGEVV QPDYINAVAS  60
   61 FETKLTPLAL LDALQHIENT QGRVRKERWG PRTLDLDLLL YGDAIIDEPR LKVPHYGMKE 120
  121 RSFVLVPLAA IAPDLVLPCK TPLQSLISEK FLAELQLLGN DH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1cbkA
Description:	6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	5.95418117400583	bayes_pls_golite062009
diphosphotransferase activity	4.79017391246148	bayes_pls_golite062009
catalytic activity	2.44295736158702	bayes_pls_golite062009
transferase activity	1.5312510694044	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	1.34283740138285	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: