YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346427, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346427, gi|....

Description	E-value	Query Range	Subject Range
gi\|52424408, gi\|... - gi\|52424408\|ref\|YP_087545.1\| AlsT protein [Mannheimia succiniciproducens MBEL55E], gi\|52306460\|gb\|AA...	546.0	[0..1]	[445..1]
gi\|28897277, gi\|... - gi\|28897277\|ref\|NP_796882.1\| sodium/alanine symporter [Vibrio parahaemolyticus RIMD 2210633], gi\|288... gi\|28805486 - gi\|28805486\|dbj\|BAC58766.1\| sodium/alanine symporter [Vibrio parahaemolyticus RIMD 2210633] gi\|153840330, gi... - gi\|153840330\|ref\|ZP_01992997.1\| sodium/alanine symporter [Vibrio parahaemolyticus AQ3810], gi\|149746...	533.0	[0..6]	[452..4]
gi\|117921857, gi... - gi\|78684565\|ref\|ZP_00849348.1\| Sodium:alanine symporter [Shewanella sp. ANA-3], gi\|78507502\|gb\|EAP21...	532.0	[0..1]	[452..1]
gi\|28211600, gi\|... - gi\|28211600\|ref\|NP_782544.1\| Na(+)-linked D-alanine glycine permease [Clostridium tetani E88], gi\|28...	530.0	[0..4]	[439..43]
gi\|113890239, gi... - gi\|78690355\|ref\|ZP_00855003.1\| Sodium:alanine symporter [Shewanella sp. MR-7], gi\|78510267\|gb\|EAP236...	529.0	[0..1]	[452..1]
gi\|37197583, gi\|... - gi\|37678842\|ref\|NP_933451.1\| sodium/alanine symporter [Vibrio vulnificus YJ016], gi\|37197583\|dbj\|BAC...	529.0	[0..6]	[446..19]
gi\|82405383, gi\|... - gi\|82496615\|ref\|ZP_00882181.1\| Sodium:alanine symporter [Shewanella sp. MR-4], gi\|82405383\|gb\|EAP460...	527.0	[0..1]	[452..1]
gi\|59480162, gi\|... - gi\|59712061\|ref\|YP_204837.1\| sodium-linked D-alanine glycine permease [Vibrio fischeri ES114], gi\|59...	527.0	[0..3]	[443..4]
gi\|90439228, gi\|... - gi\|90579654\|ref\|ZP_01235463.1\| putative sodium/alanine symporter [Vibrio angustum S14], gi\|90439228\|...	525.0	[0..3]	[448..8]
gi\|27360116, gi\|... - gi\|27363999\|ref\|NP_759527.1\| Na+/alanine symporter [Vibrio vulnificus CMCP6], gi\|27360116\|gb\|AAO0905...	524.0	[0..6]	[446..4]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFQALLSSL NGIVWGPITL CLLVGTGVYL TTRLKLIQVF RLPMALSLLF KPAKGHGDLS  60
   61 SFAALCTALS ATIGTGNIVG VATAIKMGGP GALFWMWLAA FFGMATKYAE CMLAVKYRTT 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DARGQIAGGP MYYIERGLGL RWMAKLFALF GVGVAFFGIG TFAQVNAISD ALTIAFDVPT  60
   61 WTTALVLTLL VAAVTLGGVK RISNVAQKLV PAMSIGYVLA CVWILLGFAE AILPALQLVV 120
  121 ESAF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [245-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPVSAAGGFL GATVAQAIQM GIARGVFSNE SGLGSAPIAA AAAKTNEPVE QGLVSMTGTF  60
   61 FDTIIICTMT GLVLIITGVW SGD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [328-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TAGAAMTSAA FSLGGSAAIG QYLVTIALVC FAFTTILGWH YYGERCWYYL VGERGLRAYQ  60
   61 IVFLGLIAGG AFIKLDVIWL LADTVNGLMA IPNLIAIIGL RHIIIAETQS YFVRTFTNST 120
  121 LNPIY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits