YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346423, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346423, gi|....

Description	E-value	Query Range	Subject Range
GSPG_AERHY - Type II secretion system protein G OS=Aeromonas hydrophila GN=exeG PE=3 SV=1	136.0	[0..2]	[114..3]
gi\|68531143, gi\|... - gi\|94312315\|ref\|YP_585525.1\| general secretion pathway protein G [Ralstonia metallidurans CH34], gi\|...	134.0	[0..2]	[114..16]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	134.0	[0..3]	[114..17]
gi\|28805118, gi\|... - gi\|28896910\|ref\|NP_796515.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 22106... gi\|28805118 - gi\|28805118\|dbj\|BAC58399.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 221063... gi\|149746473, gi... - gi\|153839996\|ref\|ZP_01992663.1\| general secretion pathway protein G [Vibrio parahaemolyticus AQ3810]...	133.0	[0..2]	[114..5]
GSPG_KLEPN - Type II secretion system protein G OS=Klebsiella pneumoniae GN=pulG PE=1 SV=1 gi\|227576, gi\|96552 - gi\|96552\|pir\|\|S11917 pulG protein - Klebsiella oxytoca, gi\|227576\|prf\|\|1707264A pulG gene	133.0	[0..2]	[113..1]
gi\|88949148, gi\|... - gi\|88949148\|ref\|ZP_01151766.1\| General secretion pathway protein G [Halorhodospira halophila SL1], g...	133.0	[0..3]	[114..7]
gi\|74017632, gi\|... - gi\|74017632\|ref\|ZP_00688255.1\| General secretion pathway protein G [Burkholderia ambifaria AMMD], gi... gi\|171991641, gi... - gi\|172059124\|ref\|YP_001806776.1\| general secretion pathway protein G [Burkholderia ambifaria MC40-6]... gi\|170699041, gi... - gi\|170699041\|ref\|ZP_02890098.1\| general secretion pathway protein G [Burkholderia ambifaria IOP40-10...	133.0	[0..3]	[114..13]
gi\|7108555 - gi\|7108555\|gb\|AAF36472.1\| GspG [Burkholderia cenocepacia] gi\|198037901, gi... - gi\|206561859\|ref\|YP_002232624.1\| type II secretion system protein G [Burkholderia cenocepacia J2315]... gi\|7108555 - gi\|7108555\|gb\|AAF36472.1\|AF127982_2 GspG [Burkholderia cenocepacia]	132.0	[0..3]	[114..13]
gi\|134137346, gi... - gi\|67546892\|ref\|ZP_00424801.1\| General secretion pathway protein G [Burkholderia vietnamiensis G4], ...	132.0	[0..3]	[114..13]
gi\|170731432, gi... - gi\|170731432\|ref\|YP_001763379.1\| general secretion pathway protein G [Burkholderia cenocepacia MC0-3... gi\|194557640, gi... - gi\|84356360\|ref\|ZP_00981208.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Burkholderia ce... gi\|107021574, gi... - gi\|67657443\|ref\|ZP_00454821.1\| General secretion pathway protein G [Burkholderia cenocepacia AU 1054... gi\|11559479 - gi\|11559479\|dbj\|BAB18792.1\| GspG [Burkholderia cepacia] gi\|116688082, gi... - gi\|67662232\|ref\|ZP_00459522.1\| General secretion pathway protein G [Burkholderia cenocepacia HI2424]...	131.0	[0..3]	[114..13]

Back

Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLQKGFTL IELMIAVAII GILAAIAIPS FNEYLKQGRR FDAQQYLVTS AQALERHYSR  60
   61 NGLYPASQSL ANSPYYSFSY TPTADKFGFS LKAVPTNRQS DPCGTLSLDH KGVRVPATNC 120
  121 WSH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.0
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits