YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372442, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372442, gi|....

Description	E-value	Query Range	Subject Range
gi\|34499266, gi\|... - gi\|34499266\|ref\|NP_903481.1\| general secretion pathway protein G [Chromobacterium violaceum ATCC 124...	107.0	[0..1]	[141..4]
gi\|78701109, gi\|... - gi\|78701109\|ref\|ZP_00865562.1\| General secretion pathway protein G [Alkalilimnicola ehrlichei MLHE-1...	106.0	[0..1]	[144..2]
FMM1_NEIGO - Fimbrial protein OS=Neisseria gonorrhoeae GN=pilE1 PE=1 SV=2	106.0	[0..3]	[141..2]
gi\|48781360, gi\|... - gi\|91785781\|ref\|YP_560987.1\| general secretion pathway protein G [Burkholderia xenovorans LB400], gi...	105.0	[0..4]	[141..17]
GSPG_AERHY - Type II secretion system protein G OS=Aeromonas hydrophila GN=exeG PE=3 SV=1	104.0	[0..1]	[141..1]
gi\|68531143, gi\|... - gi\|94312315\|ref\|YP_585525.1\| general secretion pathway protein G [Ralstonia metallidurans CH34], gi\|...	103.0	[0..3]	[141..16]
gi\|78061923, gi\|... - gi\|78061923\|ref\|YP_371831.1\| general secretion pathway protein G [Burkholderia sp. 383], gi\|77969808...	102.0	[0..3]	[141..17]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRPSIEGFT LVELMVVIAI IGILASLALP SYRDLIAKES LISTANELIS SYKFARGEAI  60
   61 KRNQAVTLEA KQDGRWLIIS NQEELKVFSP SSRGISIDGF NTLDINATGN TTKTQISLEN 120
  121 TQGEKLNLCI LPSGQSFLQE EACA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits