YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346397, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346397, gi|....

Description	E-value	Query Range	Subject Range
gi\|53732465 - gi\|53732465\|ref\|ZP_00154422.2\| COG3091: Uncharacterized protein conserved in bacteria [Haemophilus i... gi\|68057920, gi\|... - gi\|68249721\|ref\|YP_248833.1\| hypothetical protein NTHI1341 [Haemophilus influenzae 86-028NP], gi\|680... gi\|145271609, gi... - gi\|145639306\|ref\|ZP_01794912.1\| hypothetical protein CGSHiII_01109 [Haemophilus influenzae PittII], ...	274.0	[0..41]	[205..2]
gi\|113969036, gi... - gi\|113969036\|ref\|YP_732829.1\| hypothetical protein Shewmr4_0692 [Shewanella sp. MR-4], gi\|113883720\|...	263.0	[0..8]	[206..4]
gi\|117921879, gi... - gi\|78685116\|ref\|ZP_00849896.1\| Protein of unknown function SprT [Shewanella sp. ANA-3], gi\|78507042\|...	263.0	[0..1]	[205..1]
gi\|46133328 - gi\|46133328\|ref\|ZP_00157011.2\| COG3091: Uncharacterized protein conserved in bacteria [Haemophilus i...	263.0	[0..53]	[205..1]
gi\|168826654, gi... - gi\|53728714\|ref\|ZP_00131808.2\| COG3091: Uncharacterized protein conserved in bacteria [Haemophilus s...	263.0	[0..40]	[204..3]
gi\|112823803, gi... - gi\|23467640\|ref\|ZP_00123220.1\| COG3091: Uncharacterized protein conserved in bacteria [Haemophilus s...	262.0	[0..40]	[204..3]
gi\|78690334, gi\|... - gi\|78690334\|ref\|ZP_00854982.1\| Protein of unknown function SprT [Shewanella sp. MR-7], gi\|78510246\|g...	262.0	[0..8]	[206..4]
gi\|26249365, gi\|... - gi\|26249365\|ref\|NP_755405.1\| hypothetical protein c3530 [Escherichia coli CFT073], gi\|26109773\|gb\|AA...	262.0	[0..42]	[204..20]
gi\|190907901, gi... - gi\|191171866\|ref\|ZP_03033412.1\| protein SprT [Escherichia coli F11], gi\|190907901\|gb\|EDV67494.1\| pro... gi\|110344685, gi... - gi\|110643093\|ref\|YP_670823.1\| hypothetical protein ECP_2938 [Escherichia coli 536], gi\|110344685\|gb\|...	262.0	[0..42]	[204..20]
SPRT_ECOSE - Protein SprT OS=Escherichia coli (strain SE11) GN=sprT PE=3 SV=1 SPRT_ECO27 - Protein SprT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sprT PE=3 SV=1 gi\|194419945, gi... - gi\|194431589\|ref\|ZP_03063880.1\| protein SprT [Shigella dysenteriae 1012], gi\|194419945\|gb\|EDX36023.1... gi\|191167921, gi... - gi\|75228898\|ref\|ZP_00715495.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECO55 - Protein SprT OS=Escherichia coli (strain 55989 / EAEC) GN=sprT PE=3 SV=1 gi\|194426368, gi... - gi\|75212434\|ref\|ZP_00712458.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECOK1 - Protein SprT OS=Escherichia coli O1:K1 / APEC GN=sprT PE=3 SV=1 SPRT_ECO7I - Protein SprT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=sprT PE=3 SV=1 gi\|83587658, gi\|... - gi\|83587658\|ref\|ZP_00926285.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECO45 - Protein SprT OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=sprT PE=3 SV=1 SPRT_ECO81 - Protein SprT OS=Escherichia coli O81 (strain ED1a) GN=sprT PE=3 SV=1 gi\|192930840, gi... - gi\|75258552\|ref\|ZP_00729974.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192959273, gi... - gi\|75239486\|ref\|ZP_00723457.1\| COG3091: Uncharacterized protein conserved in bacteria [Escherichia c... SPRT_ECOUT - Protein SprT OS=Escherichia coli (strain UTI89 / UPEC) GN=sprT PE=3 SV=1 sp\|B7UHZ1\|SPRT_ECO27 - Protein sprT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sprT PE=3 SV=1 gi\|209760118, gi... - gi\|209760124\|gb\|ACI78374.1\| hypothetical protein ECs3820 [Escherichia coli], gi\|209760118\|gb\|ACI7837... gi\|237706403, gi... - gi\|237706403\|ref\|ZP_04536884.1\| sprT [Escherichia sp. 3_2_53FAA], gi\|226899443\|gb\|EEH85702.1\| sprT [... SPRT_ECOLU - Protein SprT OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sprT PE=3 SV=1 SPRT_ECOL6 - Protein SprT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=sprT PE=3 SV=2 SPRT_ECOL6 - Protein sprT OS=Escherichia coli O6 GN=sprT PE=3 SV=2	259.0	[0..42]	[204..2]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTQGSLPKF LLSALSRNPS ANTNTAEHPQ SKPNTRFANQ TKTNAKPLTP VQQQILERIE  60
   61 DCYQQAEAYF KRAFPRPTTQ FTLRGRSAGT AHLQQNRLRF NPVLLRENSE AFLAEVVPHE 120
  121 ISHLLCFQIF GKTKPHGREW QSIMLKLFKI SPNTTHNFDT QSVKGKDVEY RCACGPIRLG 180
  181 IRRHNKVLRG ETRYLCKRCH THLTLA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	2ckiA
Description:	No description for 2ckiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits