YRC Public Data Repository - Protein Structure Prediction

Protein:	RIHA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIHA_SHEON.

Description	E-value	Query Range	Subject Range
RIHA_SHESM - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella sp. (strain MR-4) GN=rihA PE=3 SV=1	424.0	[0..1]	[318..1]
RIHA_SHESR - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella sp. (strain MR-7) GN=rihA PE=3 SV=1	422.0	[0..1]	[318..1]
RIHA_SHESA - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella sp. (strain ANA-3) GN=rihA PE=3 SV=1	421.0	[0..1]	[318..1]
RIHA_SHEB5 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Shewanella baltica (strain OS155 / ATCC BAA-109...	413.0	[0..1]	[318..1]
gi\|145565955, gi... - gi\|77814975\|ref\|ZP_00814222.1\| Purine nucleosidase [Shewanella putrefaciens CN-32], gi\|77810039\|gb\|E...	411.0	[0..1]	[318..1]
gi\|160862396, gi... - gi\|160876874\|ref\|YP_001556190.1\| ribonucleoside hydrolase 1 [Shewanella baltica OS195], gi\|160862396...	411.0	[0..1]	[318..1]
gi\|124511389, gi... - gi\|124544746\|ref\|ZP_01703994.1\| Inosine/uridine-preferring nucleoside hydrolase [Shewanella putrefac... gi\|120597596, gi... - gi\|82743441\|ref\|ZP_00906087.1\| Purine nucleosidase [Shewanella sp. W3-18-1], gi\|82719196\|gb\|EAP54116...	411.0	[0..1]	[318..1]
gi\|237707382, gi... - gi\|237707382\|ref\|ZP_04537863.1\| pyrimidine-specific ribonucleoside hydrolase rihA [Escherichia sp. 3... gi\|26107024, gi\|... - gi\|26246625\|ref\|NP_752665.1\| Hypothetical protein ybeK [Escherichia coli CFT073], gi\|26107024\|gb\|AAN... gi\|91209692, gi\|... - gi\|91209692\|ref\|YP_539678.1\| hypothetical protein YbeK [Escherichia coli UTI89], gi\|91071266\|gb\|ABE0...	407.0	[0..1]	[310..12]
RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB... RIHA_SALPA - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Salmonella paratyphi A GN=rihA PE=3 SV=1 RIHA_SALPK - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Salmonella paratyphi A (strain AKU_12601) GN=ri...	406.0	[0..1]	[310..1]
RIHA_ECO45 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN... RIHA_ECOK1 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O1:K1 / APEC GN=rihA PE=3 SV=1 gi\|227838462, gi... - gi\|227884376\|ref\|ZP_04002181.1\| ribosylpyrimidine nucleosidase [Escherichia coli 83972], gi\|22783846... RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase RihA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70... gi\|162138473 - gi\|162138473\|ref\|YP_539678.2\| ribonucleoside hydrolase 1 [Escherichia coli UTI89] RIHA_ECOL6 - Pyrimidine-specific ribonucleoside hydrolase rihA OS=Escherichia coli O6 GN=rihA PE=3 SV=2	405.0	[0..1]	[310..1]

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Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCPIILDCD PGHDDAIALI LALAHPDLVP LAVTTSAGNQ TPDKTLNNAL RILTLLNRSD  60
   61 IPVAGGAAKP LARDLIIADN VHGETGLDGP ALPNPSFSPQ AITAVELMAQ QIRKSHQPVT 120
  121 LIPTGPLTNI ALLLASHSEL HDKIERIVLM GGAAGVGNWT PAAEFNIFVD PEAADIVFKS 180
  181 GIPITMCGLD VTHQAQIMDE DIERIRAIPN PVAKCVAELL DFFMIYHRDP KWGFVGAPLH 240
  241 DPCTIAWLLK PELFDAQDCW VGIETQSELT LGMTVVDRYQ LTGKPANATV LFGLNRQGFV 300
  301 DLLVHSLAAY TPTYLNRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	113.0
Match:	1yoeA
Description:	Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits