YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372395, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	588 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372395, gi|....

Description	E-value	Query Range	Subject Range
gi\|78510757, gi\|... - gi\|78689853\|ref\|ZP_00854509.1\| Twin-arginine translocation pathway signal [Shewanella sp. MR-7], gi\|...	498.0	[0..1]	[588..1]
gi\|82494796, gi\|... - gi\|82494796\|ref\|ZP_00880375.1\| Twin-arginine translocation pathway signal [Shewanella sp. MR-4], gi\|...	497.0	[0..1]	[588..1]
gi\|117614251, gi... - gi\|78685153\|ref\|ZP_00849933.1\| Twin-arginine translocation pathway signal [Shewanella sp. ANA-3], gi...	490.0	[0..1]	[588..1]
gi\|69945112, gi\|... - gi\|91794635\|ref\|YP_564286.1\| twin-arginine translocation pathway signal [Shewanella denitrificans OS...	477.0	[0..1]	[587..1]
gi\|126172900, gi... - gi\|68542827\|ref\|ZP_00582550.1\| Twin-arginine translocation pathway signal [Shewanella baltica OS155]...	474.0	[0..1]	[587..1]
gi\|160876881, gi... - gi\|160876881\|ref\|YP_001556197.1\| alkaline phosphatase [Shewanella baltica OS195], gi\|160862403\|gb\|AB...	473.0	[0..1]	[587..1]
gi\|120557683, gi... - gi\|82744498\|ref\|ZP_00907029.1\| Twin-arginine translocation pathway signal [Shewanella sp. W3-18-1], ...	456.0	[0..1]	[588..1]
gi\|119776056, gi... - gi\|68545703\|ref\|ZP_00585253.1\| Twin-arginine translocation pathway signal [Shewanella amazonensis SB...	449.0	[0..1]	[581..1]
gi\|145565961, gi... - gi\|77814981\|ref\|ZP_00814228.1\| Twin-arginine translocation pathway signal [Shewanella putrefaciens C...	447.0	[0..1]	[588..1]
gi\|78360494, gi\|... - gi\|78367394\|ref\|ZP_00837663.1\| Twin-arginine translocation pathway signal [Shewanella sp. PV-4], gi\|...	436.0	[0..1]	[584..1]

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Predicted Domain #1

Region A:
Residues: [1-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTVTRRDF LAISAKGIGA AVISYGLMGC SNSDDDNSVP AQFLHGIASG DPMQDAVILW  60
   61 TRVTPDSAGD VKVSWQVASD AAFSQLVTTG EMVTNANRDY TVKVDARGLR AGQNYFYRFM 120
  121 TGDKTSVVGK TRTLPEGEVS SVKLAVMSCA NFPAGYFNVY ELAAAQNDLD AVVHLGDYIY 180
  181 EYARGGYASE NAAKLGREVL PANELLSLSD YRTRYGQYRS DSSLQKLHAK VPFITVWDDH 240
  241 EVANDTWRDG AENHNEGEGI FAARKEAALQ AYFEWLPIRP WREGNHEEIY RSFSYGNLVD 300
  301 LHMLDTRVLA RDKQLDYADY MDATTGAFDG ERFRADVTST SRTLLGLTQL LWLQGTLLQA 360
  361 TGTWQVLGQQ ILMGKMSLPA AIATQQMSIP QFAMLGALAK LAARAAANDP TLTAQELQYL 420
  421 QANQALLTPE VIALLQLPAI PYNLDAWDGY AYEREVILGT AKSKNHNLVV IAGDTHNAWA 480
  481 NELKDVNGNT VGVEFATS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.69897
Match:	1kbpA
Description:	Purple acid phosphatase, N-terminal domain; Plant purple acid phosphatase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.76896578956606	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.835001609271161	bayes_pls_golite062009
hydrolase activity	0.804489639019031	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.619238885085331	bayes_pls_golite062009
phosphatase activity	0.478244648301674	bayes_pls_golite062009
phosphoprotein phosphatase activity	0.105572481654038	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [499-588]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVSSPGLEYY LNLPAEQIPA TEAAIVDLVP DLQYTNLKDR GFMTLTFTKD AVRSDWHYVS  60
   61 TILTKEFEEA SSRRFSAITK VGKPSINPVS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.871	0.099	metabolic process	a.77.1	DEATH domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: