YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346305, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346305, gi|....

Description	E-value	Query Range	Subject Range
gi\|67665704, gi\|... - gi\|67665704\|ref\|ZP_00462964.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia cenocepacia HI2424]... gi\|67093808, gi\|... - gi\|67658720\|ref\|ZP_00456090.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia cenocepacia AU 1054...	160.0	[0..2]	[229..246]
gi\|76581979, gi\|... - gi\|76817506\|ref\|YP_336716.1\| LysE family protein [Burkholderia pseudomallei 1710b], gi\|76581979\|gb\|A...	158.0	[0..1]	[229..439]
gi\|111617741, gi... - gi\|111617741\|ref\|ZP_01404769.1\| Lysine exporter protein (LYSE/YGGA) [Acidovorax avenae subsp. citrul...	149.0	[0..1]	[231..697]
gi\|53720860, gi\|... - gi\|53720860\|ref\|YP_109846.1\| putative amino acid transport protein [Burkholderia pseudomallei K96243... gi\|194512458, gi... - gi\|254186314\|ref\|ZP_04892831.1\| translocator protein, LysE family [Burkholderia pseudomallei Pasteur... gi\|194518065, gi... - gi\|254194638\|ref\|ZP_04901069.1\| translocator protein, LysE family [Burkholderia pseudomallei S13], g...	144.0	[0..1]	[231..31]
gi\|83648725, gi\|... - gi\|83648725\|ref\|YP_437160.1\| putative threonine efflux protein [Hahella chejuensis KCTC 2396], gi\|83...	140.0	[0..3]	[231..5]
gi\|71066613, gi\|... - gi\|71066613\|ref\|YP_265340.1\| LysE family amino acid efflux protein [Psychrobacter arcticus 273-4], g...	139.0	[0..3]	[230..4]
gi\|67548078, gi\|... - gi\|67548078\|ref\|ZP_00425973.1\| Lysine exporter protein (LYSE/YGGA) [Burkholderia vietnamiensis G4], ...	139.0	[0..1]	[232..110]
gi\|71162257, gi\|... - gi\|93007207\|ref\|YP_581644.1\| lysine exporter protein LysE/YggA [Psychrobacter cryohalolentis K5], gi...	139.0	[0..3]	[230..4]
gi\|30020423, gi\|... - gi\|30020423\|ref\|NP_832054.1\| amino acid transporter LysE [Bacillus cereus ATCC 14579], gi\|29895974\|g... gi\|228673622, gi... - gi\|229109777\|ref\|ZP_04239362.1\| Homoserine/threonine efflux protein [Bacillus cereus Rock1-15], gi\|2... gi\|228632866, gi... - gi\|229150557\|ref\|ZP_04278772.1\| Homoserine/threonine efflux protein [Bacillus cereus m1550], gi\|2286... gi\|228638652, gi... - gi\|229144930\|ref\|ZP_04273327.1\| Homoserine/threonine efflux protein [Bacillus cereus BDRD-ST24], gi\|... gi\|228655809, gi... - gi\|229127732\|ref\|ZP_04256721.1\| Homoserine/threonine efflux protein [Bacillus cereus BDRD-Cer4], gi\|... gi\|218235872, gi... - gi\|218235872\|ref\|YP_002367038.1\| putative homoserine/threonine efflux protein [Bacillus cereus B4264...	138.0	[0..3]	[230..2]
gi\|65319651 - gi\|65319651\|ref\|ZP_00392610.1\| COG1280: Putative threonine efflux protein [Bacillus anthracis str. A...	138.0	[0..3]	[230..21]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSLLFTLA LIHCVALVSP GPDFAIMVKI ATSQPRNTAI ATAVGVSVAI LAHTILSLTG  60
   61 VSLVIKSSHT LYLLVQLLGA SYLAWMGFGA LKATIAFFRK PKRLLKGEEA ESSVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [116-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TEAQANTGDN SQTKAEKSLS PRQGFMTGLY TNLLNPKALV FFLTLFSALI TPSVTPATKV  60
   61 AAALVLFVLS LIWFGFLALM LSKAKVQQKM QRITPIIDAV IGVIFMSVAL AIVSNLLLV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.952
Match:	1oedC
Description:	Acetylcholine receptor protein, delta chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits