YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346284, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346284, gi|....

Description	E-value	Query Range	Subject Range
gi\|78507116, gi\|... - gi\|78685190\|ref\|ZP_00849970.1\| ferredoxin--NADP reductase [Shewanella sp. ANA-3], gi\|78507116\|gb\|EAP...	213.0	[0..1]	[249..1]
gi\|82407077, gi\|... - gi\|82494833\|ref\|ZP_00880412.1\| ferredoxin--NADP reductase [Shewanella sp. MR-4], gi\|82407077\|gb\|EAP4...	210.0	[0..1]	[249..1]
gi\|114046113, gi... - gi\|78689990\|ref\|ZP_00854644.1\| ferredoxin--NADP reductase [Shewanella sp. MR-7], gi\|78510643\|gb\|EAP2...	209.0	[0..1]	[249..1]
gi\|113909897, gi... - gi\|160876924\|ref\|YP_001556240.1\| oxidoreductase FAD/NAD(P)-binding subunit [Shewanella baltica OS195... gi\|125996259, gi... - gi\|68544492\|ref\|ZP_00584135.1\| Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region [...	207.0	[0..1]	[249..1]
gi\|124544795, gi... - gi\|124544795\|ref\|ZP_01704043.1\| oxidoreductase FAD/NAD(P)-binding [Shewanella putrefaciens 200], gi\|... gi\|120597542, gi... - gi\|82742176\|ref\|ZP_00904877.1\| ferredoxin--NADP reductase [Shewanella sp. W3-18-1], gi\|82720450\|gb\|E... gi\|77816240, gi\|... - gi\|77816240\|ref\|ZP_00815441.1\| Oxidoreductase FAD/NAD(P)-binding [Shewanella putrefaciens CN-32], gi...	199.0	[0..1]	[249..1]
gi\|78359382, gi\|... - gi\|78368589\|ref\|ZP_00838811.1\| Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region [...	199.0	[0..1]	[249..1]
gi\|56459320, gi\|... - gi\|56459320\|ref\|YP_154601.1\| ferredoxin-NADP reductase [Idiomarina loihiensis L2TR], gi\|56178330\|gb\|...	196.0	[0..2]	[249..4]
gi\|89049000, gi\|... - gi\|89075178\|ref\|ZP_01161609.1\| hypothetical ferredoxin-NADP reductase [Photobacterium sp. SKA34], gi...	195.0	[0..2]	[249..4]
gi\|69163705, gi\|... - gi\|69953108\|ref\|ZP_00640371.1\| Oxidoreductase FAD/NAD(P)-binding [Shewanella frigidimarina NCIMB 400...	195.0	[0..1]	[249..1]
gi\|90580890, gi\|... - gi\|90580890\|ref\|ZP_01236692.1\| hypothetical ferredoxin-NADP reductase [Vibrio angustum S14], gi\|9043...	194.0	[0..2]	[249..4]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTRGRVIER IDWNDKLFSL RIAAELASFI PGQFIKLSQL QGDKRVARAY SLVNSPDKPY  60
   61 AEILAVAVED GQLSPQLQHL AIGDEIDITP TATGFMTLDE IPKGELQGRH LWFLATGTAV 120
  121 GPFLSMLDTA EPWQRFEKIV LVYGVREAKD LAYLDKLKGY AAQYPNQFIL CLAVTREKLD 180
  181 GALQCRIPDG LVSGEIERKV GLTLSAADSQ VMICGNPGMI SGAQAALLDK GLSKNLRRAP 240
  241 GQITVEKYW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.522879
Match:	1fdrA
Description:	FLAVODOXIN REDUCTASE FROM E. COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.45374095556065	bayes_pls_golite062009
binding	0.450899702470978	bayes_pls_golite062009
coenzyme binding	0.270924422726986	bayes_pls_golite062009
cofactor binding	0.2333379637469	bayes_pls_golite062009
transferase activity	0.00498326987177106	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: