YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372331, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372331, gi|....

Description	E-value	Query Range	Subject Range
gi\|7442503 - pir\|\|H71241 probable multiple sugar-binding transport ATP-binding protein - Pyrococcus horikoshii gi\|3256580, gi\|1... - gi\|3256580\|dbj\|BAA29263.1\| 375aa long hypothetical multiple sugar-binding transport ATP-binding prot...	396.0	[0..1]	[347..4]
gi\|18894131, gi\|... - gi\|18978305\|ref\|NP_579662.1\| putative sugar transport ATP-hydrolyzing [Pyrococcus furiosus DSM 3638]...	392.0	[0..5]	[347..4]
gi\|7442568, gi\|5... - pir\|\|B75207 multiple sugar-binding transport ATP-binding protein msmk PAB0123 - Pyrococcus abyssi (s... gi\|14520399, gi\|... - gi\|5457614\|emb\|CAB49105.1\| malK-2 ATP hydrolyzing subunit of the trehalose/maltose transport system ...	390.0	[0..1]	[347..1]
gi\|20808383 - gi\|20808383\|ref\|NP_623554.1\| ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, A... gi\|20516995, gi\|... - gi\|20808383\|ref\|NP_623554.1\| ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, A...	387.0	[0..1]	[348..1]
gi\|15643988, gi\|... - gi\|4981786\|gb\|AAD36307.1\|AE001779_9 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|281412971\|ref... - ABC transporter related protein [Thermotoga naphthophila RKU-10] gi\|170289367, gi... - gi\|170289367\|ref\|YP_001739605.1\| ABC transporter related [Thermotoga sp. RQ2], gi\|170176870\|gb\|ACB09... gi\|7442603 - pir\|\|A72279 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8)	386.0	[0..5]	[347..4]
gi\|114805627, gi... - gi\|167039694\|ref\|YP_001662679.1\| ABC transporter related [Thermoanaerobacter sp. X514], gi\|166853934... gi\|241884346, gi... - gi\|241903280\|ref\|ZP_04788006.1\| ABC transporter related protein [Thermoanaerobacter brockii subsp. f... gi\|242256473, gi... - gi\|242256473\|ref\|ZP_04801363.1\| ABC transporter related protein [Thermoanaerobacter sp. X513], gi\|24... gi\|256400268\|ref... - ABC transporter related protein [Thermoanaerobacter sp. X561] gi\|167036983, gi... - gi\|167036983\|ref\|YP_001664561.1\| ABC transporter related [Thermoanaerobacter pseudethanolicus ATCC 3...	386.0	[0..1]	[348..1]
gi\|119720071, gi... - gi\|119720071\|ref\|YP_920566.1\| ABC transporter related [Thermofilum pendens Hrk 5], gi\|119525191\|gb\|A...	385.0	[0..5]	[348..4]
gi\|57641710, gi\|... - gi\|57641710\|ref\|YP_184188.1\| ABC-type maltdextrin transport system, ATPase component [Thermococcus k...	384.0	[0..1]	[348..1]

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Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSTLNLHQV HSDYQGQQIL KGLDLTLAQG EILALLGPSG CGKTTLLRAV AGLQAISQGE  60
   61 IQINGKTVSG AGQFVPSEQR GIGMIFQDYA LFPHLTVAEN ILFGVAKLTT AQRKARLDDM 120
  121 LALVKLEGLA KRYPHELSGG QQQRVSIARA LAYEPQLLLL DEPFSNIDAQ VRHSMMAEIR 180
  181 SILKQRNVSA VFVTHSKDEA FVFADTLAIF SQGVIVQHGR AEDLYAAPNS RYVADFLGSG 240
  241 NYLPAEVVDG HSVTTPIGQL RSLTPLSQSH AFNGQVFLRP QQLALSADDA GVGTITERRF 300
  301 LGAFCHYWVK VEAASHAYYL EVRSQIMQFN VGQRVGLSTE PHSLVLFES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits