YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346274, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346274, gi|....

Description	E-value	Query Range	Subject Range
gi\|46324330, gi\|... - gi\|67542811\|ref\|ZP_00420746.1\| Dyp-type peroxidase [Burkholderia vietnamiensis G4], gi\|67536024\|gb\|E...	390.0	[0..4]	[307..9]
gi\|78060116, gi\|... - gi\|78060116\|ref\|YP_366691.1\| Dyp-type peroxidase [Burkholderia sp. 383], gi\|77964666\|gb\|ABB06047.1\| ...	385.0	[0..4]	[307..9]
gi\|48733478, gi\|... - gi\|77459480\|ref\|YP_348987.1\| Dyp-type peroxidase [Pseudomonas fluorescens Pf0-1], gi\|77383483\|gb\|ABA...	385.0	[0..7]	[308..8]
gi\|115285737, gi... - gi\|74017994\|ref\|ZP_00688616.1\| Dyp-type peroxidase [Burkholderia ambifaria AMMD], gi\|72609170\|gb\|EAO...	385.0	[0..4]	[307..9]
gi\|33601458, gi\|... - gi\|33601458\|ref\|NP_889018.1\| hypothetical protein BB2478 [Bordetella bronchiseptica RB50], gi\|335758...	383.0	[0..6]	[307..1]
gi\|91782011, gi\|... - gi\|91782011\|ref\|YP_557217.1\| Dyp-type peroxidase [Burkholderia xenovorans LB400], gi\|91685965\|gb\|ABE...	382.0	[0..6]	[307..1]
gi\|67658535, gi\|... - gi\|67658535\|ref\|ZP_00455906.1\| Dyp-type peroxidase [Burkholderia cenocepacia AU 1054], gi\|67093864\|g... gi\|67102210, gi\|... - gi\|67664193\|ref\|ZP_00461469.1\| Dyp-type peroxidase [Burkholderia cenocepacia HI2424], gi\|67102210\|gb...	380.0	[0..5]	[307..11]
gi\|33573069 - gi\|33573069\|emb\|CAE36711.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596066 - gi\|33596066\|ref\|NP_883709.1\| hypothetical protein BPP1409 [Bordetella parapertussis 12822]	380.0	[0..6]	[307..1]
gi\|194561618, gi... - gi\|84351942\|ref\|ZP_00976918.1\| COG2837: Predicted iron-dependent peroxidase [Burkholderia cenocepaci...	380.0	[0..5]	[307..11]
gi\|254255601, gi... - gi\|84357970\|ref\|ZP_00982772.1\| COG2837: Predicted iron-dependent peroxidase [Burkholderia dolosa AUO...	379.0	[0..5]	[307..10]

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Predicted Domain #1

Region A:
Residues: [1-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIQNMPREQ LGVCAEGNLH SVYLMFNAND NVESQLRPCI ANVAQYIYEL TDQYSDSAFN  60
   61 GFVAIGANYW DSLYPESRPE MLKPFPAMQE GNREAPAIEY DLFVHLRCDR YDILHLVANE 120
  121 ISQMFEDLVE LVEEERGFRF MDSRDLTGFV DGTENPKGRH RQEVALVGSE DPEFKGGSYI 180
  181 HVQKYAHNLS KWHRLPLKKQ EDIIGRTKQD NIEYESEDKP LTSHIKRVNL KDENGKSIEI 240
  241 LRQSMPYGSL KEQGLMFIST CRTPDHFEKM LHSMVFGDGA GNHDHLMHFT SALTGSSFFA 300
  301 PSLDFLMQFD N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	2hagA
Description:	No description for 2hagA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.00297805940248941	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: