YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372281, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	253 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372281, gi|....

Description	E-value	Query Range	Subject Range
gi\|83653593, gi\|... - gi\|83719768\|ref\|YP_442453.1\| DNA adenine methylase [Burkholderia thailandensis E264], gi\|83653593\|gb...	307.0	[0..1]	[253..62]
gi\|113950598, gi... - gi\|160875271\|ref\|YP_001554587.1\| DNA adenine methylase [Shewanella baltica OS195], gi\|160860793\|gb\|A...	304.0	[0..1]	[253..1]
gi\|34103421, gi\|... - gi\|34497566\|ref\|NP_901781.1\| methyltransferase [Chromobacterium violaceum ATCC 12472], gi\|34103421\|g...	302.0	[0..2]	[253..6]
gi\|254216644, gi... - gi\|254257955\|ref\|ZP_04949009.1\| gp26 [Burkholderia pseudomallei 1710a], gi\|254216644\|gb\|EET06028.1\| ... gi\|38505408, gi\|... - gi\|38707916\|ref\|NP_945057.1\| gp26 [Burkholderia phage phi1026b], gi\|38505408\|gb\|AAR23177.1\| gp26 [Ba... gi\|17975188, gi\|... - gi\|17975188\|ref\|NP_536383.1\| DNA adenine methylase [Burkholderia phage phiE125], gi\|17484049\|gb\|AAL4... gi\|76580112, gi\|... - gi\|76810659\|ref\|YP_333100.1\| hypothetical protein BURPS1710b_1697 [Burkholderia pseudomallei 1710b],...	302.0	[0..1]	[253..1]
gi\|161361439, gi... - gi\|82533286\|ref\|ZP_00892372.1\| hypothetical protein Bpse110_02005412 [Burkholderia pseudomallei 1106...	300.0	[0..1]	[253..1]
gi\|91693170, gi\|... - gi\|91780510\|ref\|YP_555717.1\| putative N6 adenine-specific DNA methyltransferase, D12 class [Burkhold...	299.0	[0..1]	[253..1]
gi\|254197738, gi... - gi\|67759520\|ref\|ZP_00498255.1\| COG0338: Site-specific DNA methylase [Burkholderia pseudomallei S13],...	298.0	[0..1]	[253..1]
gi\|56692617, gi\|... - gi\|56692617\|ref\|YP_164085.1\| Dam modification methylase [Pseudomonas phage B3], gi\|33338642\|gb\|AAQ13...	296.0	[0..2]	[253..3]

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Predicted Domain #1

Region A:
Residues: [1-253]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKPIIPWMG GKRRLVKEIL PLFPEHHTYV EPFCGGAAMF FSKDEARVEV VNDMNGDLVN  60
   61 LYRVIKHHLE EFIRHFKWAL ISREEFLWQK NTNPETLTDI QRASRFYYLQ KLAFGGKVSS 120
  121 QNFGSSASRP AGLNLLRIEE DLSIAHLRLA RTYIERLDWA ECVRRYDKPE TLFYLDPPYW 180
  181 STAGYGVEFG LEQYALMAEL AKTIKGKMVI SVNDIPEMRE VFAGLQMKTL GIKYTVGGSG 240
  241 RSGEQQELLI WNW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.30103
Match:	2oreD
Description:	No description for 2oreD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits