YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372265, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	389 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372265, gi|....

Description	E-value	Query Range	Subject Range
gi\|25350716 - pir\|\|E91250 probable proteinase protein [imported] - Escherichia coli (strain O157:H7, substrain RI... gi\|13364449, gi\|... - gi\|15834227\|ref\|NP_313000.1\| putative protease protein [Escherichia coli O157:H7], gi\|13364449\|dbj\|B... gi\|13364449, gi\|... - gi\|15834227\|ref\|NP_313000.1\| putative protease protein [Escherichia coli O157:H7 str. Sakai], gi\|133... gi\|217325485, gi... - gi\|217325485\|ref\|ZP_03441569.1\| protein gp32 [Escherichia coli O157:H7 str. TW14588], gi\|217321706\|g... gi\|189368100, gi... - gi\|189368100\|gb\|EDU86516.1\| protein gp32 [Escherichia coli O157:H7 str. EC4501], gi\|168761519\|ref\|ZP...	392.0	[0..5]	[386..2]
gi\|57904723 - gi\|57904723\|gb\|AAW58968.1\| I protein [Cloning vector MuNXKan] PRO_BPMU - Protease I OS=Enterobacteria phage Mu GN=I PE=1 SV=2	392.0	[0..11]	[388..5]
gi\|188495046, gi... - gi\|75513090\|ref\|ZP_00735552.1\| COG4388: Mu-like prophage I protein [Escherichia coli 53638], gi\|1884...	388.0	[0..11]	[388..5]
gi\|194430090, gi... - gi\|75208649\|ref\|ZP_00708953.1\| COG4388: Mu-like prophage I protein [Escherichia coli B171], gi\|19443...	383.0	[0..11]	[388..5]
gi\|160875256, gi... - gi\|160875256\|ref\|YP_001554572.1\| prophage MuSo1, protein Gp32, putative [Shewanella baltica OS195], ...	383.0	[0..6]	[389..2]
VPI_HAEIN - Mu-like prophage FluMu I protein OS=Haemophilus influenzae GN=HI_1504 PE=3 SV=1 VPI_HAEIN - Mu-like prophage FluMu I protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / R...	373.0	[0..17]	[385..1]
gi\|11282045 - pir\|\|G81120 I protein, probable NMB1098 [imported] - Neisseria meningitidis (strain MC58 serogroup B... gi\|15676978, gi\|... - gi\|7226336\|gb\|AAF41489.1\| putative I protein [Neisseria meningitidis MC58], gi\|15676978\|ref\|NP_27412...	361.0	[0..18]	[385..4]
gi\|33151720, gi\|... - gi\|33151720\|ref\|NP_873073.1\| bacteriophage Mu I protein GP32 [Haemophilus ducreyi 35000HP], gi\|33147...	360.0	[0..25]	[385..17]
gi\|67533452, gi\|... - gi\|67545320\|ref\|ZP_00423243.1\| conserved hypothetical protein [Burkholderia vietnamiensis G4], gi\|67...	357.0	[0..25]	[378..7]
gi\|170718830, gi... - gi\|32029863\|ref\|ZP_00132817.1\| COG4388: Mu-like prophage I protein [Haemophilus somnus 2336], gi\|170...	357.0	[0..23]	[383..3]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSKTQTTI AIGVAALSST IAINPSTTGV LFGEDGYIQA LPDGHFAAVD GRPDDVPGGK  60
   61 WLMDAAAFAA LKANTPHKAG DLVIDYEHQT LNKEQNGQPA PASGWFNIDD VQYRQGQGLF 120
  121 IKPRFTDNAI AHLNAKEYRY FSLVFGYDKA TGRPLFIHSA ALTNRPGVDG MLPLAALAAL 180
  181 AALDTSLNA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-389]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NALPHPTQPE GLHVNPLLMK LLAALGIEIA EGSEPTEAQL NDALKRIDDL VKAAGSVDGL  60
   61 KQEVAALTAK VGTVDLSEYV PVSTANALRA QLVALTAENG VLTVEQTVKA AIDEGKAFEC 120
  121 ERDYLTQLGN QNMAALTANI NARTPIAALT AKQTTTVPYP TKDKDTKLAA LTADQIKLAD 180
  181 SWGMSHADVA KALAAEQEQK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits