YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346181, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	546 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346181, gi|....

Description	E-value	Query Range	Subject Range
gi\|113950618, gi... - gi\|160875248\|ref\|YP_001554564.1\| prophage MuSo1, portal protein, putative [Shewanella baltica OS195]...	688.0	[0..1]	[546..1]
gi\|16502704, gi\|... - gi\|25332945\|pir\|\|AD0686 conserved hypothetical protein STY1615 [imported] - Salmonella enterica subs... gi\|29141827, gi\|... - gi\|29141827\|ref\|NP_805169.1\| hypothetical protein t1373 [Salmonella enterica subsp. enterica serovar... gi\|16760409 - gi\|16760409\|ref\|NP_456026.1\| hypothetical protein STY1615 [Salmonella enterica subsp. enterica serov...	653.0	[0..7]	[529..8]
gi\|25332942 - pir\|\|A91250 probable portal protein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0... gi\|13364445, gi\|... - gi\|15834223\|ref\|NP_312996.1\| putative portal protein [Escherichia coli O157:H7 str. Sakai], gi\|13364... gi\|13364445, gi\|... - gi\|15834223\|ref\|NP_312996.1\| putative portal protein [Escherichia coli O157:H7], gi\|13364445\|dbj\|BAB... gi\|217322535, gi... - gi\|217326314\|ref\|ZP_03442398.1\| hypothetical protein ESCCO14588_1761 [Escherichia coli O157:H7 str. ... gi\|168761523, gi... - gi\|189367967\|gb\|EDU86383.1\| protein gp28 [Escherichia coli O157:H7 str. EC4501], gi\|168761523\|ref\|ZP...	643.0	[0..39]	[546..42]
gi\|75228562 - gi\|75228562\|ref\|ZP_00715196.1\| COG4373: Mu-like prophage FluMu protein gp28 [Escherichia coli B7A]	641.0	[0..7]	[520..8]
gi\|57904719 - gi\|57904719\|gb\|AAW58964.1\| gp28 [Cloning vector MuNXKan] TERL_BPMU - Probable terminase, large subunit gp28 OS=Enterobacteria phage Mu GN=Mup28 PE=2 SV=1	635.0	[0..38]	[546..40]
gi\|75208645, gi\|... - gi\|75208645\|ref\|ZP_00708949.1\| COG4373: Mu-like prophage FluMu protein gp28 [Escherichia coli B171],...	633.0	[0..38]	[546..40]
gi\|75513094, gi\|... - gi\|75513094\|ref\|ZP_00735556.1\| COG4373: Mu-like prophage FluMu protein gp28 [Escherichia coli 53638]...	631.0	[0..38]	[546..40]
VG28_HAEIN - Mu-like prophage FluMu protein gp28 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 ... VG28_HAEIN - Mu-like prophage FluMu protein gp28 OS=Haemophilus influenzae GN=HI_1500 PE=4 SV=1	628.0	[0..37]	[538..10]
gi\|33151382, gi\|... - gi\|33151382\|ref\|NP_872735.1\| Mu-like phage gp28 [Haemophilus ducreyi 35000HP], gi\|33147602\|gb\|AAP951...	615.0	[0..37]	[537..9]
gi\|84779333, gi\|... - gi\|85058813\|ref\|YP_454515.1\| hypothetical protein SG0835 [Sodalis glossinidius str. 'morsitans'], gi...	608.0	[0..25]	[520..4]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTIKKKVLAA ATAVALAITP TANSFDPTYE ASCLSRFDPK EVLLGYQKRW IADESPLKIG  60
   61 EKSRRTGLTW AEAADASLTA GAARGQGGTN HFYVGSNKEM AREFIDAAAM WAKVFDKAAG 120
  121 EIQEEMFVDD GQEGKEILTF AIYFSSGFKI QALSSNPSNL RGMQGNVTID EAAFHERLAE 180
  181 VLKAALALTM WGAKVRLIST HNGIDNLFNE LINDSRAGKK DYSIHRITLD DACAEGLYQR 240
  241 ICQIRGIEWS QAAEDDWKAK LLKATATEED ALEEYFCVPK SGGGSYLSRA LIESRMASVE 300
  301 HSGPVVRLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.221849
Match:	2o0hA
Description:	No description for 2o0hA was found.

Predicted Domain #2

Region A:
Residues: [310-546]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKNDFGEWPE GLRTAEIADW CSSELLPILL TLDQSRPHVF GEDFARSGDL TVIDVGEIAQ  60
   61 DLHIKTKLQV ELKNIPFRQQ EQILFYIVDR LPRLRGGAMD ARGNGQALAE YARDRYGSEV 120
  121 IECVMLSESF YREQMPRFKS HFEDALLTIP RDDDTRTDLQ ALVINNRGTP CLGDVRTGKE 180
  181 KERHGDAAIS LFLMVYATTL DGAPIEFTPI PKSDHRNPNA HASAHEDDDH QLQRGCW

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits