YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346156, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	239 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346156, gi|....

Description	E-value	Query Range	Subject Range
gi\|114315948, gi... - gi\|114327774\|ref\|YP_744931.1\| cell division protein ftsH [Granulibacter bethesdensis CGDNIH1], gi\|11...	214.0	[0..2]	[237..163]
gi\|20808757, gi\|... - gi\|20808757\|ref\|NP_623928.1\| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4], gi\|20... gi\|20808757 - gi\|20808757\|ref\|NP_623928.1\| ATP-dependent Zn protease [Thermoanaerobacter tengcongensis MB4]	213.0	[0..2]	[235..167]
gi\|83950084, gi\|... - gi\|83950084\|ref\|ZP_00958817.1\| ATP-dependent metalloprotease FtsH [Roseovarius nubinhibens ISM], gi\|...	213.0	[0..2]	[237..160]
gi\|110683762, gi... - gi\|110803261\|ref\|YP_699726.1\| ATP-dependent metalloprotease FtsH [Clostridium perfringens SM101], gi...	212.0	[0..2]	[235..164]
gi\|50841750, gi\|... - gi\|50841750\|ref\|YP_054977.1\| putative cell division protein FtsH [Propionibacterium acnes KPA171202]...	212.0	[0..3]	[235..174]
gi\|110800961, gi... - gi\|110800961\|ref\|YP_697158.1\| ATP-dependent metalloprotease FtsH [Clostridium perfringens ATCC 13124...	212.0	[0..2]	[235..164]
gi\|168211208, gi... - gi\|170710762\|gb\|EDT22944.1\| ATP-dependent metalloprotease FtsH [Clostridium perfringens B str. ATCC ... gi\|170713449, gi... - gi\|170713449\|gb\|EDT25631.1\| ATP-dependent metalloprotease FtsH [Clostridium perfringens CPE str. F49... gi\|168218230, gi... - gi\|182379753\|gb\|EDT77232.1\| ATP-dependent metalloprotease FtsH [Clostridium perfringens NCTC 8239], ... gi\|18146136, gi\|... - gi\|18311452\|ref\|NP_563386.1\| ATP-dependent metalloprotease FtsH [Clostridium perfringens str. 13], g... gi\|170661765, gi... - gi\|170661765\|gb\|EDT14448.1\| ATP-dependent metalloprotease FtsH [Clostridium perfringens E str. JGS19...	212.0	[0..2]	[235..164]
gi\|207742906, gi... - gi\|207742906\|ref\|YP_002259298.1\| atp-dependent zinc metallopeptidase (cell division protein ftsh) [R... gi\|83747762, gi\|... - gi\|83747762\|ref\|ZP_00944796.1\| Cell division protein ftsH [Ralstonia solanacearum UW551], gi\|8372553... gi\|207723996, gi... - gi\|207723996\|ref\|YP_002254394.1\| atp-dependent zinc metallopeptidase (cell division protein ftsh) [R...	212.0	[0..2]	[235..160]
gi\|17428542 - gi\|17428542\|emb\|CAD15228.1\| probable atp-dependent zinc metallopeptidase (cell division ftsh) transm... gi\|17546245 - gi\|17546245\|ref\|NP_519647.1\| ATP-dependent zinc metallopeptidase [Ralstonia solanacearum GMI1000]	212.0	[0..2]	[235..160]
gi\|86283151, gi\|... - gi\|86359049\|ref\|YP_470941.1\| cell division metalloproteinase protein [Rhizobium etli CFN 42], gi\|862...	212.0	[0..2]	[237..164]

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Predicted Domain #1

Region A:
Residues: [1-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHKIVEVKN VLACLELMEN LQGRSSITPG IGLIHGPSGF GKTTTLCWLI NQLGAMNAIY  60
   61 VRCYATDTPS SFLARIMEEL GSEMLYPMRK SVDFIVDRMN ERQLPLFIDE ADHIVGQSKI 120
  121 METIRDLYDA TEQPVVLVGM EEIARRISHR KQLFNRVSEW VEFQPADLSD VHSFAAELLD 180
  181 DRITVADDLL EHIRKRSGGE VRRILTALEK IERSAIANDM DIVTLDNWGD QPLFLEFRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.0
Match:	2ce7A
Description:	EDTA treated
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits