YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346152, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346152, gi|....

Description	E-value	Query Range	Subject Range
gi\|86134306, gi\|... - gi\|86134306\|ref\|ZP_01052888.1\| zinc-binding dehydrogenase [Polaribacter sp. MED152], gi\|85821169\|gb\|...	335.0	[0..6]	[332..10]
gi\|28872343, gi\|... - gi\|28872343\|ref\|NP_794962.1\| oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC30... tr\|Q87UR5\|Q87UR5... - Oxidoreductase, zinc-binding protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_523...	325.0	[0..8]	[330..1]
gi\|89351306, gi\|... - gi\|89359757\|ref\|ZP_01197577.1\| quinone oxidoreductase [Xanthobacter autotrophicus Py2], gi\|89351306\|...	325.0	[0..3]	[331..5]
gi\|76160992 - gi\|76160992\|gb\|ABA40459.1\| NADPH quinone oxidoreductase-like protein [Solanum tuberosum]	324.0	[0..8]	[332..1]
gi\|15234529, gi\|... - pir\|\|T05166 quinone reductase homolog F18E5.200 - Arabidopsis thaliana, gi\|7268955\|emb\|CAB81265.1\| p...	324.0	[0..8]	[331..1]
gi\|71733591, gi\|... - gi\|71733591\|ref\|YP_272602.1\| quinone oxidoreductase [Pseudomonas syringae pv. phaseolicola 1448A], g...	320.0	[0..8]	[330..1]
gi\|77385669, gi\|... - gi\|77461666\|ref\|YP_351173.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	319.0	[0..8]	[332..1]
gi\|63254289, gi\|... - gi\|66043582\|ref\|YP_233423.1\| zinc-containing alcohol dehydrogenase superfamily protein [Pseudomonas ...	318.0	[0..8]	[330..1]
gi\|69141746, gi\|... - gi\|92119008\|ref\|YP_578737.1\| zinc-binding alcohol dehydrogenase [Nitrobacter hamburgensis X14], gi\|9...	318.0	[0..1]	[332..1]
gi\|48765136 - ref\|ZP_00269687.1\| COG0604: NADPH:quinone reductase and related Zn-dependent oxidoreductases [Rhodos... gi\|83575306, gi\|... - gi\|83592392\|ref\|YP_426144.1\| zinc-containing alcohol dehydrogenase superfamily protein [Rhodospirill...	317.0	[0..2]	[332..3]

Back

Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDLPNDYAH IHIEQPGAPE VMQLSRSSLP VVGAGQVLIR VSAAGVNGPD LKQRAGAYPP  60
   61 PPGASLILGL EVAGEICALG EGVTQWQLGD KVCALVPGGG YGEYTLTYAA HCLPIPKGFS 120
  121 MVQAAALPET FFTVWGNLFM RAGLKAGETV LIHGGSGGIG STAIALANRL GAKVIATTGQ 180
  181 DEKRDYCLGL GADLVVNYNS QNFVEEVMSF TQGKGVNVVF DIAGGDFINL NLQSLALDGR 240
  241 MVSVSTQRSP KAEVNILQLM AKRIVWTGST LRPQTVEAKA EIARQLRERV WPLLDSQQIV 300
  301 PHIFATYPLI DAPKAHRLMQ SGEHRGKVVL TL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.045757
Match:	2j8zA
Description:	No description for 2j8zA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits