YRC Public Data Repository - Protein Structure Prediction

Protein:	ARGD_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARGD_SHEON.

Description	E-value	Query Range	Subject Range
ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii GN=argD PE=3 SV=1 ARGD_METJA - Acetylornithine aminotransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JA...	352.0	[0..1]	[404..1]
ARGD_THETN - Acetylornithine aminotransferase OS=Thermoanaerobacter tengcongensis GN=argD PE=3 SV=1 ARGD_CALS4 - Acetylornithine aminotransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 1...	348.0	[0..14]	[403..7]
gi\|85859272, gi\|... - gi\|85859272\|ref\|YP_461474.1\| acetylornithine aminotransferase [Syntrophus aciditrophicus SB], gi\|857...	342.0	[0..1]	[401..1]
gi\|84488867, gi\|... - gi\|84488867\|ref\|YP_447099.1\| acetylornithine aminotransferase [Methanosphaera stadtmanae DSM 3091], ...	340.0	[0..1]	[399..1]
gi\|134298152, gi... - gi\|88944090\|ref\|ZP_01147423.1\| Acetylornithine and succinylornithine aminotransferase [Desulfotomacu...	339.0	[0..1]	[399..1]
gi\|110601528, gi... - gi\|222054221\|ref\|YP_002536583.1\| acetylornithine and succinylornithine aminotransferase [Geobacter s...	339.0	[0..1]	[402..1]
gi\|116696578, gi... - gi\|71546438\|ref\|ZP_00667239.1\| Acetylornithine and succinylornithine aminotransferase [Syntrophobact...	339.0	[0..1]	[401..1]
ARGD_PSEPK - Acetylornithine aminotransferase OS=Pseudomonas putida (strain KT2440) GN=argD PE=3 SV=1	338.0	[0..1]	[404..1]
gi\|148546674, gi... - gi\|82737730\|ref\|ZP_00900576.1\| Acetylornithine and succinylornithine aminotransferase [Pseudomonas p... tr\|I7AZT5\|I7AZT5... - Acetylornithine aminotransferase OS=Pseudomonas putida (strain DOT-T1E) GN=argD PE=3 SV=1	338.0	[0..1]	[404..1]
gi\|88917343, gi\|... - gi\|88935900\|ref\|ZP_01141523.1\| Acetylornithine and succinylornithine aminotransferase [Geobacter ura...	338.0	[0..3]	[402..1]

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Predicted Domain #1

Region A:
Residues: [1-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVDMKLNRA QFDAVMVPNY APAAVIPVRG EGSRVWDQEG NEFIDFAGGI AVNCLGHCHP  60
   61 ALVNALKTQG EKLWHLSNVM TNEPALELAT KLVNSTFAER VYFANSGAEA NEAALKLARR 120
  121 YALEKHGVEK DEIIAFDKAF HGRTFFTVSV GGQAAYSDGF GPKPQSITHL PFNDVAALEA 180
  181 AVSDKTCAIM LEPLQGEGGI IDADPAFLKA VRELANKHNA LVIFDEVQTG VGRTGELYAY 240
  241 MGTDIVPDIL TTAKALGGGF PIAAMLTTTE IAEHLKVGTH GSTYGGNPLA CAIGNAVLDV 300
  301 VNTPEVLNGV KHREQLLRDG LNKINEKYHV FSEVRGKGLL LGAVLNEQYQ GRSRDFLVAS 360
  361 VAEGLMSLMA GANVVRFAPS LVIPEADIAE GLARFERAVA SIAAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	88.69897
Match:	2e54A
Description:	No description for 2e54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits