YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346115, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346115, gi|....

Description	E-value	Query Range	Subject Range
gi\|117611390, gi... - gi\|78684358\|ref\|ZP_00849143.1\| stringent starvation protein b [Shewanella sp. ANA-3], gi\|78508110\|gb...	219.0	[0..1]	[145..1]
gi\|113968950, gi... - gi\|82495374\|ref\|ZP_00880950.1\| stringent starvation protein b [Shewanella sp. MR-4], gi\|82406558\|gb\|... gi\|114048912, gi... - gi\|78688665\|ref\|ZP_00853333.1\| stringent starvation protein b [Shewanella sp. MR-7], gi\|78512046\|gb\|...	219.0	[0..1]	[145..1]
gi\|27364054, gi\|... - gi\|27364054\|ref\|NP_759582.1\| ClpXP protease specificity-enhancing factor [Vibrio vulnificus CMCP6], ... gi\|37197525, gi\|... - gi\|37678784\|ref\|NP_933393.1\| ClpXP protease specificity-enhancing factor [Vibrio vulnificus YJ016], ...	218.0	[0..1]	[145..3]
gi\|82720523, gi\|... - gi\|82742129\|ref\|ZP_00904832.1\| stringent starvation protein b [Shewanella sp. W3-18-1], gi\|82720523\|...	215.0	[0..1]	[145..1]
gi\|77809630, gi\|... - gi\|77815431\|ref\|ZP_00814663.1\| Stringent starvation protein B [Shewanella putrefaciens CN-32], gi\|77...	215.0	[0..1]	[145..1]
gi\|113906058, gi... - gi\|160876989\|ref\|YP_001556305.1\| ClpXP protease specificity-enhancing factor [Shewanella baltica OS1... gi\|217499987, gi... - gi\|217974852\|ref\|YP_002359603.1\| ClpXP protease specificity-enhancing factor [Shewanella baltica OS2... gi\|153002265, gi... - gi\|153002265\|ref\|YP_001367946.1\| ClpXP protease specificity-enhancing factor [Shewanella baltica OS1...	213.0	[0..1]	[145..1]
gi\|28805428, gi\|... - gi\|28897219\|ref\|NP_796824.1\| ClpXP protease specificity-enhancing factor [Vibrio parahaemolyticus RI... gi\|28805428 - gi\|28805428\|dbj\|BAC58708.1\| stringent starvation protein B [Vibrio parahaemolyticus RIMD 2210633] gi\|149746046, gi... - gi\|153840294\|ref\|ZP_01992961.1\| stringent starvation protein B [Vibrio parahaemolyticus AQ3810], gi\|...	210.0	[0..1]	[145..3]
gi\|89050121, gi\|... - gi\|89074185\|ref\|ZP_01160684.1\| putative stringent starvation protein B [Photobacterium sp. SKA34], g...	208.0	[0..1]	[145..3]
gi\|238789740, gi... - gi\|77973391\|ref\|ZP_00828939.1\| COG2969: Stringent starvation protein B [Yersinia frederiksenii ATCC ...	206.0	[0..1]	[145..3]
gi\|194534426, gi... - gi\|75822353\|ref\|ZP_00751995.1\| COG2969: Stringent starvation protein B [Vibrio cholerae RC385], gi\|2... tr\|D7HDS2\|D7HDS2... - Stringent starvation protein B OS=Vibrio cholerae RC385 GN=VCRC385_00377 PE=4 SV=1	206.0	[0..1]	[145..7]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLTPNRPY LLRAYYDWLM DNQLTPHVVV DAFVKGTQVP QQYVKDGQIV LNIAAGAVGN  60
   61 LQISNEFVEF NARFGGVPQQ VLLPMASIVA IYARENGAGT VFDIEDAYLV EDEAESTLSV 120
  121 IETAEKPTEP KDEPPKRRSH LTLVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.221849
Match:	1yfnA
Description:	Versatile modes of peptide recognition by the AAA+ adaptor protein SspB- the crystal structure of a SspB-RseA complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.10198821505373	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: