YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372201, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372201, gi|....

Description	E-value	Query Range	Subject Range
gi\|114048914, gi... - gi\|78688663\|ref\|ZP_00853331.1\| ubiquinol-cytochrome c reductase cytochrome c1 subunit [Shewanella sp... gi\|82406560, gi\|... - gi\|82495376\|ref\|ZP_00880952.1\| ubiquinol-cytochrome c reductase cytochrome c1 subunit [Shewanella sp...	347.0	[0..1]	[231..1]
gi\|153002267, gi... - gi\|153002267\|ref\|YP_001367948.1\| cytochrome c1 [Shewanella baltica OS185], gi\|151366885\|gb\|ABS09885.... gi\|160876991, gi... - gi\|160876991\|ref\|YP_001556307.1\| cytochrome c1 [Shewanella baltica OS195], gi\|160862513\|gb\|ABX51047....	347.0	[0..1]	[231..1]
gi\|91716549, gi\|... - gi\|91794547\|ref\|YP_564198.1\| cytochrome c1 [Shewanella denitrificans OS217], gi\|91716549\|gb\|ABE56475...	346.0	[0..1]	[231..1]
gi\|78508108, gi\|... - gi\|78684356\|ref\|ZP_00849141.1\| ubiquinol-cytochrome c reductase cytochrome c1 subunit [Shewanella sp...	346.0	[0..1]	[231..1]
gi\|120597498, gi... - gi\|82742127\|ref\|ZP_00904830.1\| ubiquinol-cytochrome c reductase cytochrome c1 subunit [Shewanella sp...	343.0	[0..1]	[231..1]
gi\|77809632, gi\|... - gi\|77815433\|ref\|ZP_00814665.1\| Cytochrome c1 [Shewanella putrefaciens CN-32], gi\|77809632\|gb\|EAO9402...	343.0	[0..1]	[231..1]
gi\|78367081, gi\|... - gi\|78367081\|ref\|ZP_00837355.1\| Cytochrome c1 [Shewanella sp. PV-4], gi\|78360854\|gb\|EAP02684.1\| Cytoc...	330.0	[0..1]	[231..1]
gi\|68545794, gi\|... - gi\|68545794\|ref\|ZP_00585344.1\| Cytochrome c1 [Shewanella amazonensis SB2B], gi\|68516823\|gb\|EAN40534....	326.0	[0..1]	[231..1]
gi\|69165680, gi\|... - gi\|69950864\|ref\|ZP_00638682.1\| Cytochrome c1 [Shewanella frigidimarina NCIMB 400], gi\|69165680\|gb\|EA...	324.0	[0..1]	[231..1]
gi\|150422848, gi... - gi\|254291284\|ref\|ZP_04962079.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae AM... gi\|153830237, gi... - gi\|153830237\|ref\|ZP_01982904.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae 62... gi\|153827387, gi... - gi\|153827387\|ref\|ZP_01980054.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae MZ... gi\|121547107, gi... - gi\|121591036\|ref\|ZP_01678352.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae 27... gi\|124114135, gi... - gi\|153216747\|ref\|ZP_01950587.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae 15... gi\|124117833, gi... - gi\|153224135\|ref\|ZP_01954240.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae MA... gi\|124121285, gi... - gi\|153803182\|ref\|ZP_01957768.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae MZ... gi\|153820145, gi... - gi\|153820145\|ref\|ZP_01972812.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae NC... gi\|229509169, gi... - gi\|229509169\|ref\|ZP_04398654.1\| ubiquinol cytochrome C oxidoreductase cytochrome C1 subunit [Vibrio ... gi\|227080758, gi... - gi\|227080758\|ref\|YP_002809309.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae M... gi\|229507184, gi... - gi\|229507184\|ref\|ZP_04396690.1\| ubiquinol cytochrome C oxidoreductase cytochrome C1 subunit [Vibrio ... gi\|229519621, gi... - gi\|229519621\|ref\|ZP_04409064.1\| ubiquinol cytochrome C oxidoreductase cytochrome C1 subunit [Vibrio ... gi\|229342102, gi... - gi\|229520869\|ref\|ZP_04410291.1\| ubiquinol cytochrome C oxidoreductase cytochrome C1 subunit [Vibrio ... gi\|229525233, gi... - gi\|229525233\|ref\|ZP_04414638.1\| ubiquinol cytochrome C oxidoreductase cytochrome C1 subunit [Vibrio ... gi\|9655006, gi\|1... - gi\|9655006\|gb\|AAF93743.1\| ubiquinol--cytochrome c reductase, cytochrome c1 [Vibrio cholerae O1 biova... gi\|116187907, gi... - gi\|75828953\|ref\|ZP_00758280.1\| COG2857: Cytochrome c1 [Vibrio cholerae MO10], gi\|254850811\|ref\|ZP_05... gi\|229606138, gi... - gi\|229606138\|ref\|YP_002876786.1\| ubiquinol cytochrome C oxidoreductase cytochrome C1 subunit [Vibrio... gi\|11356303 - pir\|\|D82305 ubiquinol-cytochrome c reductase, cytochrome c1 VC0575 [imported] - Vibrio cholerae (str... gi\|147673543, gi... - gi\|75825942\|ref\|ZP_00755377.1\| COG2857: Cytochrome c1 [Vibrio cholerae O395], gi\|227116951\|ref\|YP_00... gi\|121730041, gi... - gi\|75814449\|ref\|ZP_00745036.1\| COG2857: Cytochrome c1 [Vibrio cholerae V52], gi\|121730041\|ref\|ZP_016...	323.0	[0..1]	[231..1]

Back

Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLLIALVT LLPTLAIAAG GQVHLEDANV DLHDKASLER GLGLFQHYCS GCHSTQYQRY  60
   61 ERVANDLGIS ADDMRNKYMF TDAKIGELMQ NAIPPKDAAK WFGATPPDLT LVARVRGEDW 120
  121 VYSYLKGFYK DPSRPFGVNN TVFPSVGMPH VLEELQGTPV KQEDGTIVVS GGKLNAEEYD 180
  181 QAVRDITGFL VYSAEPVKLE RQALGWWVLG FLFIFFIVAY LLKKEYWKDV H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	1ezvD
Description:	Cytochrome bc1 domain; Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	3.4564166385356	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	3.4564166385356	bayes_pls_golite062009
electron carrier activity	3.40214573753335	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	3.08381068515965	bayes_pls_golite062009
oxidoreductase activity	2.491960995681	bayes_pls_golite062009
electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	1.41573374177098	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: