YRC Public Data Repository - Protein Structure Prediction

Protein:	MIAA_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIAA_SHEON.

Description	E-value	Query Range	Subject Range
gi\|90414476, gi\|... - gi\|90414476\|ref\|ZP_01222452.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Photobacterium pr...	420.0	[0..1]	[304..1]
MIAA_PHOLL - tRNA dimethylallyltransferase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1... MIAA_PHOLL - tRNA dimethylallyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=miaA PE=3 SV=1	420.0	[0..7]	[304..10]
MIAA_SHIB3 - tRNA dimethylallyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=miaA PE...	419.0	[0..1]	[305..4]
MIAA_SHEPC - tRNA dimethylallyltransferase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=miaA PE=3 ...	418.0	[0..5]	[308..1]
MIAA_PHOPR - tRNA dimethylallyltransferase OS=Photobacterium profundum GN=miaA PE=3 SV=1 MIAA_PHOPR - tRNA dimethylallyltransferase OS=Photobacterium profundum (strain SS9) GN=miaA PE=3 SV=1	418.0	[0..1]	[304..1]
gi\|24115526, gi\|... - gi\|24115526\|ref\|NP_710036.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella flexneri 2... gi\|30065543, gi\|... - gi\|30065543\|ref\|NP_839714.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella flexneri 2... MIAA_SHIFL - tRNA dimethylallyltransferase OS=Shigella flexneri GN=miaA PE=3 SV=1	418.0	[0..1]	[305..4]
MIAA_VIBCM - tRNA dimethylallyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=miaA PE=3 SV=1 MIAA_VIBCH - tRNA dimethylallyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N1696... MIAA_VIBCH - tRNA dimethylallyltransferase OS=Vibrio cholerae GN=miaA PE=3 SV=1 gi\|124113774, gi... - gi\|153217191\|ref\|ZP_01950955.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Vibrio cholerae ... gi\|153224588, gi... - gi\|153224588\|ref\|ZP_01954511.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Vibrio cholerae ... gi\|148873630, gi... - gi\|153830896\|ref\|ZP_01983563.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Vibrio cholerae ... gi\|254851657, gi... - gi\|254851657\|ref\|ZP_05241007.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Vibrio cholerae ... MIAA_VIBC3 - tRNA dimethylallyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 39... gi\|121729705, gi... - gi\|75814895\|ref\|ZP_00745437.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Vibrio c... gi\|153820448, gi... - gi\|153820448\|ref\|ZP_01973115.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Vibrio cholerae ... gi\|153823680, gi... - gi\|153823680\|ref\|ZP_01976347.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Vibrio cholerae ...	418.0	[0..3]	[304..2]
MIAA_SHESW - tRNA dimethylallyltransferase OS=Shewanella sp. (strain W3-18-1) GN=miaA PE=3 SV=1	417.0	[0..5]	[308..1]
MIAA_ECOLI - tRNA delta(2)-isopentenylpyrophosphate transferase (EC 2.5.1.8) (IPP transferase) (Isopentenyl-dipho... gi\|85676922, gi\|... - gi\|89110891\|ref\|AP_004671.1\| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase [Escherich... MIAA_ECODH - tRNA dimethylallyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=miaA PE=3 SV=1 gi\|194434582, gi... - gi\|194434582\|ref\|ZP_03066839.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella dysente... MIAA_ECOSE - tRNA dimethylallyltransferase OS=Escherichia coli (strain SE11) GN=miaA PE=3 SV=1 gi\|75234280, gi\|... - gi\|75234280\|ref\|ZP_00718668.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric... MIAA_ECOHS - tRNA dimethylallyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=miaA PE=3 SV=1 MIAA_ECO24 - tRNA dimethylallyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=miaA PE=3 SV=1 gi\|194439532, gi... - gi\|83585091\|ref\|ZP_00923744.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric... MIAA_SHIBS - tRNA dimethylallyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=miaA PE=3 SV=1 MIAA_SHISS - tRNA dimethylallyltransferase OS=Shigella sonnei (strain Ss046) GN=miaA PE=3 SV=1 gi\|75515410, gi\|... - gi\|75515410\|ref\|ZP_00737567.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric... gi\|192926358, gi... - gi\|75255898\|ref\|ZP_00727630.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric... MIAA_ECO8A - tRNA dimethylallyltransferase OS=Escherichia coli O8 (strain IAI1) GN=miaA PE=3 SV=1 EG10595 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase / Dimethylallyl diphosphate:tRNA dimeth... MIAA_ECO55 - tRNA dimethylallyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=miaA PE=3 SV=1 MIAA_ECOBW - tRNA dimethylallyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=miaA PE=3 SV=1 gi\|251787420, gi... - gi\|251787420\|ref\|YP_003001724.1\| hypothetical protein B21_04000 [Escherichia coli BL21], gi\|24237969... gi\|253326248, gi... - gi\|254290850\|ref\|YP_003056598.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia col... gi\|226840291, gi... - gi\|254037185\|ref\|ZP_04871262.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia sp. ... gi\|254164100, gi... - gi\|254164100\|ref\|YP_003047208.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia col... MIAA_SHIF8 - tRNA dimethylallyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=miaA PE=3 SV=2 MIAA_ECOLC - tRNA dimethylallyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=miaA PE=... gi\|2506034 - gi\|2506034\|dbj\|BAA22627.1\| tRNA delta 2-isopentenylpyrophosphate transferase [Shigella flexneri] EG10595 - delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase / Dimethylallyl diphosphate:tRNA dimeth...	417.0	[0..1]	[305..4]
gi\|77976471 - gi\|77976471\|ref\|ZP_00831958.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Yersinia...	417.0	[0..6]	[301..9]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKELQPKVV FLMGPTASGK TALALELAEK HNCEIISVDS ALIYRGMDIG SAKPSAEELA  60
   61 RGPHRLIDIR DPSESYSAAD FRADALSEIE QIISMGKTPL LVGGTMMYFK ALLEGLSPLP 120
  121 SADEVIRADI QAEADANGWE ALHDQLREID PVSAERIHPN DPQRLSRALE VYRISGKSLT 180
  181 ELTMTKSAPL PYNVVQFAIA PRERKVLHEL IGQRFRIMLE QGFIDEVAQL KARDDLHLDL 240
  241 PSMRCVGYRQ CWQYLDGEFD HDTMVEKAIA ATRQLAKRQL TWLRSWPELN WLESGAEGNL 300
  301 VTLMRHCR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	109.0
Match:	2qgnA
Description:	No description for 2qgnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits