YRC Public Data Repository - Protein Structure Prediction

Protein:	MUTL_SHEON
Organism:	Shewanella oneidensis MR-1
Length:	631 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MUTL_SHEON.

Description	E-value	Query Range	Subject Range
MUTL_PSEPK - DNA mismatch repair protein MutL OS=Pseudomonas putida (strain KT2440) GN=mutL PE=3 SV=1	429.0	[0..3]	[630..7]
MUTL_PSEE4 - DNA mismatch repair protein MutL OS=Pseudomonas entomophila (strain L48) GN=mutL PE=3 SV=1 gi\|95112861 - gi\|95112861\|emb\|CAK17589.1\| DNA mismatch repair protein MutL [Pseudomonas entomophila L48]	428.0	[0..3]	[630..7]
gi\|148549974, gi... - gi\|82738817\|ref\|ZP_00901641.1\| DNA mismatch repair protein [Pseudomonas putida F1], gi\|82714129\|gb\|E...	428.0	[0..3]	[630..8]
MUTL_AZOVD - DNA mismatch repair protein MutL OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=mutL PE=3 ... gi\|23104554, gi\|... - gi\|67157127\|ref\|ZP_00418489.1\| DNA mismatch repair protein [Azotobacter vinelandii AvOP], ref\|ZP_000...	425.0	[0..3]	[630..7]
gi\|90022314, gi\|... - gi\|90022314\|ref\|YP_528141.1\| DNA mismatch repair protein [Saccharophagus degradans 2-40], gi\|8995191...	424.0	[0..1]	[630..1]
MUTL_PSEA7 - DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain PA7) GN=mutL PE=3 SV=1	423.0	[0..3]	[630..7]
MUTL_PSEAE - DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 ... gi\|126170270, gi... - gi\|84317612\|ref\|ZP_00966051.1\| COG0323: DNA mismatch repair enzyme (predicted ATPase) [Pseudomonas a... MUTL_PSEAE - DNA mismatch repair protein mutL OS=Pseudomonas aeruginosa GN=mutL PE=3 SV=1 MUTL_PSEA8 - DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain LESB58) GN=mutL PE=3 SV=1	422.0	[0..3]	[630..7]
MUTL_PSEAB - DNA mismatch repair protein MutL OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=mutL PE=3 SV=1 gi\|107104045 - gi\|107104045\|ref\|ZP_01367963.1\| hypothetical protein PaerPA_01005118 [Pseudomonas aeruginosa PACS2]	422.0	[0..3]	[630..7]
gi\|63254544, gi\|... - gi\|66043837\|ref\|YP_233678.1\| DNA mismatch repair protein [Pseudomonas syringae pv. syringae B728a], ...	419.0	[0..3]	[630..23]
gi\|116221138, gi... - gi\|75820509\|ref\|ZP_00750554.1\| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV... tr\|A0A085RQ54\|A0... - DNA gyrase subunit B OS=Vibrio cholerae GN=gyrB PE=3 SV=1 gi\|254291124, gi... - gi\|254291124\|ref\|ZP_04961921.1\| DNA gyrase, subunit B [Vibrio cholerae AM-19226], gi\|197751544\|ref\|Y...	417.0	[0..2]	[564..9]

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Predicted Domain #1

Region A:
Residues: [1-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIQILPPQL ANQIAAGEVV ERPASVVKEL VENSLDAGAS RIDIEIDKGG SKLIKIRDNG  60
   61 SGIPKEELAL ALSRHATSKL HSLDDLEAIL SFGFRGEALA SISSVSRLTL TSRTAEQSEA 120
  121 WQAYAEGVEM AVKVMPAAHP VGSTIEVVDL FFNTPARRRF LKSDKTEFTH IDEWLKRIAL 180
  181 VRGDIHFTLT HNGKTVRNYR PAMNEPQYLQ RLTQVAGRPF ADEALRVECQ HDDLRLSGYL 240
  241 QSPWSTVLTD THYFYVNGRL VRDRLVNHAV RQAFAQKAEV EQPGYVLMLD IDPHQVDVNV 300
  301 HPAKHEVRFH QSRYVHDYIL QALQSALEEA GELRFEPHSP QIDDSSPYVK PE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.522879
Match:	1bknA
Description:	DNA mismatch repair protein MutL
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [353-631]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESSAFELQS TESNAKYLGI DTTGERQAEA RVVEYRSSDM PKMRTGTAVQ SNAFGSMSVP  60
   61 RETRSGSSGE SRPRAELPSK TAIASYGALL QTPSYSVQDK AYQPTLPMPS ILDGQFWVFT 120
  121 DGPKLSLLRI ESVALATRSD EIETKLATGL IGQPLLMPVS VAADTDWSSL LDEHATLIRQ 180
  181 LGLELTIRYQ QLIIKKVPPY LRDCQLARVI PEWLQSLRFE APAPNALAIW LAEQSLTGFI 240
  241 SAPDVWVAYC QLTEEKRQQI ASKAVSLPWQ SWLEEQAIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.09691
Match:	1bgwA
Description:	TOPOISOMERASE RESIDUES 410-1202,
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits