YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24346086, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24346086, gi|....

Description	E-value	Query Range	Subject Range
gi\|223488779, gi... - gi\|254479407\|ref\|ZP_05092739.1\| Glycerophosphoryl diester phosphodiesterase family protein [Carboxyd... gi\|20807473 - gi\|20807473\|ref\|NP_622644.1\| Glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon... gi\|20807473, gi\|... - gi\|20807473\|ref\|NP_622644.1\| glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon...	231.0	[0..2]	[229..4]
gi\|51893596, gi\|... - gi\|51893596\|ref\|YP_076287.1\| glycerophosphodiester phosphodiesterase [Symbiobacterium thermophilum I...	228.0	[0..2]	[224..3]
gi\|18144079, gi\|... - gi\|18309403\|ref\|NP_561337.1\| glycerophosphodiester phosphodiesterase [Clostridium perfringens str. 1...	227.0	[0..1]	[232..4]
gi\|110800595, gi... - gi\|110800595\|ref\|YP_694881.1\| putative glycerophosphoryl diester phosphodiesterase [Clostridium perf...	227.0	[0..1]	[232..4]
gi\|25487769 - pir\|\|D84112 glycerophosphoryl diester phosphodiesterase glpQ [imported] - Bacillus halodurans (strai... gi\|10176324, gi\|... - gi\|15616262\|ref\|NP_244567.1\| glycerophosphoryl diester phosphodiesterase [Bacillus halodurans C-125]...	226.0	[0..1]	[221..39]
gi\|242257355, gi... - gi\|242257355\|ref\|ZP_04802223.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X513... gi\|241904084, gi... - gi\|241904084\|ref\|ZP_04788795.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter brockii ... gi\|114844053, gi... - gi\|167040045\|ref\|YP_001663030.1\| glycerophosphodiester phosphodiesterase [Thermoanaerobacter sp. X51... gi\|166856211, gi... - gi\|76797455\|ref\|ZP_00779769.1\| Glycerophosphodiester phosphodiesterase [Thermoanaerobacter ethanolic...	225.0	[0..2]	[231..4]
gi\|47076778 - gi\|47076778\|dbj\|BAD18321.1\| glycerophosphodiester phosphodiesterase [Geobacillus stearothermophilus]	224.0	[0..3]	[229..4]
gi\|110801784, gi... - gi\|110801784\|ref\|YP_697749.1\| glycerophosphoryl diester phosphodiesterase [Clostridium perfringens S...	223.0	[0..1]	[230..4]
gi\|47076828 - gi\|47076828\|dbj\|BAD18368.1\| glycerophosphodiester phosphodiesterase [Geobacillus kaustophilus] gi\|56380762, gi\|... - gi\|56420920\|ref\|YP_148238.1\| glycerophosphodiester phosphodiesterase [Geobacillus kaustophilus HTA42...	222.0	[0..2]	[229..3]
gi\|229134982, gi... - gi\|229134982\|ref\|ZP_04263788.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-ST... gi\|228747972, gi... - gi\|229013379\|ref\|ZP_04170519.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus mycoides DSM 2... gi\|163864116, gi... - gi\|89207000\|ref\|ZP_01185549.1\| Glycerophosphodiester phosphodiesterase [Bacillus weihenstephanensis ...	221.0	[0..2]	[227..3]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIFAHRGAS GYVAENTLAA MAKAIELGAK AIELDVHNVE GELVVFHDRR LDSKSSGTGI  60
   61 IHLVSQDYLA NVTVKGESIS TLWQVLELVA GRATVNIELK GINTVAPLFK LYPKAIAELG 120
  121 FSAEQLLISS FNHPYLQQVK QALPQALVAP LLASIPLDGA AVVSELNAYS LHLDVSFISK 180
  181 VLVDDAHRRG AKVYVYTVDH SDDIHALKQL GVDGIFSNYP DRAMQALLQP TTTDYRGYFE 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.522879
Match:	2oogA
Description:	No description for 2oogA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits