YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345995, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345995, gi|....

Description	E-value	Query Range	Subject Range
gi\|56964831, gi\|... - gi\|56964831\|ref\|YP_176562.1\| peptide chain release factor 2 [Bacillus clausii KSM-K16], gi\|56911074\|...	156.0	[0..1]	[137..183]
ARFB_PSEPU - Peptidyl-tRNA hydrolase ArfB OS=Pseudomonas putida GN=arfB PE=3 SV=1	155.0	[0..1]	[136..1]
gi\|148263843, gi... - gi\|88935925\|ref\|ZP_01141548.1\| Peptide chain release factor 2 [Geobacter uraniumreducens Rf4], gi\|88...	154.0	[0..2]	[137..169]
gi\|70728998, gi\|... - gi\|70728998\|ref\|YP_258732.1\| hypothetical protein PFL_1606 [Pseudomonas fluorescens Pf-5], gi\|683432...	153.0	[0..1]	[136..17]
gi\|95110180 - gi\|95110180\|emb\|CAK14887.1\| putative protein chain release factor B [Pseudomonas entomophila L48] gi\|104781193, gi... - gi\|95110180\|emb\|CAK14887.1\| putative protein chain release factor B [Pseudomonas], gi\|104781193\|ref\|...	153.0	[0..1]	[136..1]
gi\|91762141, gi\|... - gi\|91762141\|ref\|ZP_01264106.1\| bacterial peptide chain release factor 2 (RF-2) [Candidatus Pelagibac...	152.0	[0..2]	[137..142]
gi\|77381724, gi\|... - gi\|77457721\|ref\|YP_347226.1\| hypothetical protein Pfl01_1494 [Pseudomonas fluorescens Pf0-1], gi\|773...	152.0	[0..1]	[136..1]
gi\|78223569, gi\|... - gi\|78223569\|ref\|YP_385316.1\| peptide chain release factor 2 [Geobacter metallireducens GS-15], gi\|78...	152.0	[0..2]	[137..214]
gi\|71083436, gi\|... - gi\|71083436\|ref\|YP_266155.1\| peptide chain release factor 2 [Candidatus Pelagibacter ubique HTCC1062...	152.0	[0..2]	[137..142]
gi\|49077264 - gi\|49077264\|gb\|AAT49658.1\| PA0868 [synthetic construct]	152.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKISNRVEL PENEIEWQFI RSSGAGGQNV NKVSTAAQLI FDIKNSSLPE FYQQRLLQKA  60
   61 DHRITASGKI IIKCQASRSQ DANRQTALVQ FIALVASVAD VAKKRIPTRA TKSSQTKRLD 120
  121 TKKQRGATKA MRQFKLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.0
Match:	2jvaA
Description:	No description for 2jvaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits