YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24372082, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24372082, gi|....

Description	E-value	Query Range	Subject Range
gi\|126197265, gi... - gi\|84324065\|ref\|ZP_00972130.1\| COG1131: ABC-type multidrug transport system, ATPase component [Pseud...	148.0	[0..41]	[252..705]
gi\|87290507, gi\|... - gi\|87306328\|ref\|ZP_01088475.1\| ABC transporter, ATP-binding protein [Blastopirellula marina DSM 3645...	148.0	[0..34]	[252..521]
gi\|218894333, gi... - gi\|218894333\|ref\|YP_002443203.1\| putative ATP-binding/permease fusion ABC transporter [Pseudomonas a... gi\|107104333 - gi\|107104333\|ref\|ZP_01368251.1\| hypothetical protein PaerPA_01005408 [Pseudomonas aeruginosa PACS2] gi\|15600424, gi\|... - gi\|9951539\|gb\|AAG08616.1\|AE004935_13 probable ATP-binding/permease fusion ABC transporter [Pseudomon... gi\|11351066 - pir\|\|G82993 probable ATP-binding/permease fusion ABC transporter PA5231 [imported] - Pseudomonas aer...	148.0	[0..41]	[252..707]
gi\|84317900, gi\|... - gi\|84317900\|ref\|ZP_00966335.1\| COG1131: ABC-type multidrug transport system, ATPase component [Pseud...	147.0	[0..41]	[252..707]
gi\|53726694, gi\|... - gi\|53726694\|ref\|ZP_00347664.1\| COG1131: ABC-type multidrug transport system, ATPase component [Pseud...	147.0	[0..42]	[252..708]
gi\|94417706, gi\|... - gi\|94417706\|ref\|ZP_01297523.1\| hypothetical protein PaerP_01000484 [Pseudomonas aeruginosa PA7], gi\|...	147.0	[0..36]	[252..702]
gi\|197095890, gi... - gi\|197364413\|ref\|YP_002144050.1\| hypothetical ABC transporter ATP-binding protein [Salmonella enteri... gi\|56129742, gi\|... - gi\|56415485\|ref\|YP_152560.1\| ABC transporter ATP-binding protein [Salmonella enterica subsp. enteric...	142.0	[0..35]	[255..698]
gi\|16422147 - gi\|16422147\|gb\|AAL22446.1\| putative ABC-type multidrug transport system [Salmonella enterica subsp. ...	142.0	[0..35]	[255..681]
gi\|62182085, gi\|... - gi\|62182085\|ref\|YP_218502.1\| mtultidrug ABC transporter permease/ATPase [Salmonella enterica subsp. ...	140.0	[0..35]	[255..698]

Back

Predicted Domain #1

Region A:
Residues: [1-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALTLIQAVA VKEFKDNLRN RWLWLMAGML LILSLCVSFM GSAVSGSLVV SESAQIFSGL  60
   61 VTLAVFILPL GAILLSYDSF VGERESGTLL LLLTYPLARW HLVCGKLLGH AYVIATACLL 120
  121 GFGLTALLLV ALGEAHARLT LVTGFIHLIG SGILLSLVFV LLGYCVSLCV REKAKALGVL 180
  181 LLLWFVLVLV YDLVLLTALV SMAEVLSRHL FNLLILINPT DLFRALNLLA NPADSLSAKS 240
  241 SLALIAQSGM GIPLMYGLFV GWLAVLSLIC CFIFNRQEV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits