YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24345962, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	332 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24345962, gi|....

Description	E-value	Query Range	Subject Range
gi\|15073645 - gi\|15073645\|emb\|CAC45287.1\| Probable putrescine transport ATP-binding protein [Sinorhizobium melilot... gi\|15964468 - gi\|15964468\|ref\|NP_384821.1\| putrescine ABC transporter ATP-binding protein [Sinorhizobium meliloti ...	288.0	[0..5]	[323..16]
gi\|15676514, gi\|... - gi\|7225840\|gb\|AAF41037.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Neisseria meni... gi\|11346333 - pir\|\|C81179 spermidine/putrescine ABC transporter, ATP-binding protein NMB0610 [imported] - Neisseri...	288.0	[0..1]	[293..46]
gi\|226512138, gi... - gi\|254493098\|ref\|ZP_05106269.1\| spermidine/putrescine ABC transporter [Neisseria gonorrhoeae 1291], ... gi\|59717542, gi\|... - gi\|59800647\|ref\|YP_207359.1\| putative ABC transporter, ATP-binding protein, polyamine [Neisseria gon...	287.0	[0..1]	[293..57]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	284.0	[0..5]	[295..15]
gi\|46143847 - gi\|46143847\|ref\|ZP_00204582.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com... gi\|165875837, gi... - gi\|165975736\|ref\|YP_001651329.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu... gi\|126207768, gi... - gi\|126207768\|ref\|YP_001052993.1\| putrescine/spermidine ABC transporter ATPase protein [Actinobacillu...	284.0	[0..10]	[307..7]
gi\|11346292 - pir\|\|G81926 probable polyamine permease ATP-binding protein NMA0816 [imported] - Neisseria meningiti... gi\|7379535, gi\|1... - gi\|7379535\|emb\|CAB84098.1\| putative polyamine permease ATP-binding protein [Neisseria meningitidis Z...	284.0	[0..1]	[293..1]
gi\|116250536, gi... - gi\|116250536\|ref\|YP_766374.1\| putrescine ABC transporter ATP-binding protein [Rhizobium leguminosaru...	283.0	[0..5]	[310..15]
gi\|86356366, gi\|... - gi\|86356366\|ref\|YP_468258.1\| spermidine/putrescine ABC transporter, ATP-binding protein [Rhizobium e...	283.0	[0..5]	[296..15]
gi\|4980927, gi\|1... - gi\|4980927\|gb\|AAD35506.1\|AE001721_5 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|7442604, gi\|1... - pir\|\|E72378 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8), gi\|16028...	282.0	[0..11]	[300..2]
POTA_MARHV - Spermidine/putrescine import ATP-binding protein PotA OS=Marinobacter hydrocarbonoclasticus (strain ...	281.0	[0..10]	[332..3]

Back

Predicted Domain #1

Region A:
Residues: [1-332]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKQTAAQGQ VAVKAVGLSK RYAEFEAVKD LNFEVLTGQT LALLGHNGAG KSTLIKLILG  60
   61 LVSPSAGQLY VQGQEVQAKR VNASLSLGYL PENVSFYDNM TAHELLSYFA KLKGVAPVRV 120
  121 NLLLEEFGLM AAKDKRLRTF SKGMRQRLGL AQAVLADPKV LLLDEPTVGL DPLASAFLYQ 180
  181 KMAQLKAQGC AIIISTHELG LVQDQMDSAL ILGQGQMLAS GNLHSLRAAT SLPSLIELHH 240
  241 VTPLQYQQLL SQALFASLLE PSASDRVCLR VPDVLKAKVI QQLQGLKIHE FSVVPPSLQD 300
  301 IFHFYMASLY PHGTPSSAAF GSAKNVKSEL VA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits